View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8061_low_57 (Length: 293)

Name: NF8061_low_57
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8061_low_57
NF8061_low_57
[»] chr3 (5 HSPs)
chr3 (16-277)||(10544028-10544281)
chr3 (23-261)||(37192970-37193208)
chr3 (16-131)||(31194201-31194316)
chr3 (16-131)||(52773997-52774112)
chr3 (23-126)||(53979080-53979183)
[»] chr8 (4 HSPs)
chr8 (23-261)||(2997396-2997634)
chr8 (214-269)||(25575143-25575198)
chr8 (214-269)||(20077426-20077481)
chr8 (23-126)||(15194062-15194165)
[»] chr6 (5 HSPs)
chr6 (23-261)||(34824690-34824928)
chr6 (23-261)||(33460533-33460771)
chr6 (164-261)||(5374237-5374333)
chr6 (214-261)||(25420574-25420621)
chr6 (23-135)||(26134405-26134517)
[»] chr5 (1 HSPs)
chr5 (16-250)||(19717705-19717939)
[»] scaffold0779 (1 HSPs)
scaffold0779 (214-269)||(4719-4774)
[»] chr2 (2 HSPs)
chr2 (214-276)||(18499115-18499177)
chr2 (214-276)||(26360786-26360848)
[»] scaffold0014 (1 HSPs)
scaffold0014 (16-131)||(94855-94970)
[»] chr4 (3 HSPs)
chr4 (16-131)||(13988947-13989062)
chr4 (23-126)||(18254929-18255032)
chr4 (214-261)||(2005593-2005640)
[»] chr7 (1 HSPs)
chr7 (23-131)||(16257487-16257595)
[»] scaffold0164 (1 HSPs)
scaffold0164 (23-126)||(26189-26292)
[»] chr1 (1 HSPs)
chr1 (23-126)||(49640116-49640219)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 10544281 - 10544028
Alignment:
Q  16 atcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaatta 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||         
T  10544281 atcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttaaaaaccc----- 10544187  T
Q  116 ctccctataggcttgacattaggaggagtttgcacaattgttcaggtaccattcttagccaaagcatctaattcagaatccatagcctttaccgaatatt 215  Q
       |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| || |||    
T  10544186 ---cctataggcttgacattaggaggagtttgcacaattgttcaggtactattcttagccaaaacatctaattcagaatccatagcctttacctaacatt 10544090  T
Q  216 cagactgacatgcttccttataggttttgggctcaatactttgtgtaatagaaagagaaaat 277  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  10544089 cagactgacatgctttcttataggttttgggctcagtactttgtgtaatagaaagagaaaat 10544028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 37193208 - 37192970
Alignment:
Q  23 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 122  Q
    |||||||||||||||||||| || || |||| |||  |||||||| |||| || || ||||| ||||| |  || || ||||||||||| ||||| || |    
T  37193208 ccttcaacttgattatatcctttagccaccagtctagctttgtatctttctatactgccatctgccttgtgcttaattttataaacccacttactaccaa 37193109  T
Q  123 taggcttgacattaggaggagtttgcacaattgttcaggtaccattcttagccaaagcatctaattcagaatccatagcctttaccgaatattcagactg 222  Q
    ||||||| |||||  |||||   |  ||||| |  || || ||||||||||| || || |||||||||||||||||||| |||| | || ||||||||||    
T  37193108 taggcttcacattgtgaggaagatcaacaatagaccaagttccattcttagctaatgcttctaattcagaatccatagcttttaaccaacattcagactg 37193009  T
Q  223 acatgcttccttataggttttgggctcaatactttgtgt 261  Q
    ||  ||||| || |||||||| |||||| ||| ||||||    
T  37193008 actagcttctttgtaggtttttggctcagtacattgtgt 37192970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 31194201 - 31194316
Alignment:
Q  16 atcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaatta 115  Q
    ||||| |||||||||||||||||| || || || |||| |||| | |||||  | || ||||||||||| ||||||| |||||| ||||| ||||| |||    
T  31194201 atcaataccttcaacttgattataacctttagccaccagtctggccttgtacctctctatgctcccatctgccttatgtttgattttatacacccattta 31194300  T
Q  116 ctccctataggcttga 131  Q
    || || ||||| ||||    
T  31194301 ctaccaataggtttga 31194316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 52774112 - 52773997
Alignment:
Q  16 atcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaatta 115  Q
    ||||| |||||||||||||||||| || || || |||| |||| | |||||  | || ||||||||||| ||||||| |||||| ||||| ||||| |||    
T  52774112 atcaataccttcaacttgattataacctttagccaccagtctggccttgtacctctctatgctcccatctgccttatgtttgattttatacacccattta 52774013  T
Q  116 ctccctataggcttga 131  Q
    || || ||||| ||||    
T  52774012 ctaccaataggtttga 52773997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 53979183 - 53979080
Alignment:
Q  23 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 122  Q
    |||||||||||| |||| || ||||| ||||||||  |||| ||| |||| ||  ||||||| | |||||  |||||||| |||||||| || |||||||    
T  53979183 ccttcaacttgagtatagccttttgctaccaatctagctttatatctttctatagtcccatctgacttatgcttgatcttgtaaacccatttgctcccta 53979084  T
Q  123 tagg 126  Q
    ||||    
T  53979083 tagg 53979080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 2997634 - 2997396
Alignment:
Q  23 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 122  Q
    |||||||||||||||||||| || || |||| |||  |||||||| |||| || || ||||| ||||| |  || || ||||||||||| ||||| || |    
T  2997634 ccttcaacttgattatatcctttagccaccagtctagctttgtatctttctatactgccatctgccttgtgcttaattttataaacccacttactaccaa 2997535  T
Q  123 taggcttgacattaggaggagtttgcacaattgttcaggtaccattcttagccaaagcatctaattcagaatccatagcctttaccgaatattcagactg 222  Q
    ||||||| |||||  |||||   |  ||||| |  || || |||||||||||||| || ||||||||||| |||||||| |||| | || ||||||||||    
T  2997534 taggcttcacattgtgaggaagatcaacaatagaccaagttccattcttagccaatgcttctaattcagattccatagcttttaaccaacattcagactg 2997435  T
Q  223 acatgcttccttataggttttgggctcaatactttgtgt 261  Q
    ||  ||||| || |||||||| |||||| ||| ||||||    
T  2997434 actagcttctttgtaggtttttggctcagtacattgtgt 2997396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 25575143 - 25575198
Alignment:
Q  214 ttcagactgacatgcttccttataggttttgggctcaatactttgtgtaatagaaa 269  Q
    ||||||||||||||| || |||||||||||||||||| ||||||||||||| ||||    
T  25575143 ttcagactgacatgcctctttataggttttgggctcagtactttgtgtaatggaaa 25575198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 20077481 - 20077426
Alignment:
Q  214 ttcagactgacatgcttccttataggttttgggctcaatactttgtgtaatagaaa 269  Q
    |||||||||||||||||| || |||||||| |||||| |||||||||| |||||||    
T  20077481 ttcagactgacatgcttctttgtaggttttaggctcagtactttgtgtgatagaaa 20077426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 15194165 - 15194062
Alignment:
Q  23 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 122  Q
    |||||||||||| |||| || ||||| ||||||||  |||| ||| |||| ||  ||||||| | |||||  |||||||| |||||||| || |||||||    
T  15194165 ccttcaacttgagtatagccttttgctaccaatctagctttatatctttctatagtcccatctgacttatgcttgatcttgtaaacccatttgctcccta 15194066  T
Q  123 tagg 126  Q
    ||||    
T  15194065 tagg 15194062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 34824928 - 34824690
Alignment:
Q  23 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 122  Q
    |||||||||||||||||||| || || |||| |||  |||||||| |||| || || ||||| ||||| |  || || ||||||||||| ||||| || |    
T  34824928 ccttcaacttgattatatcctttagccaccagtctagctttgtatctttctatactgccatctgccttgtgcttaattttataaacccacttactaccaa 34824829  T
Q  123 taggcttgacattaggaggagtttgcacaattgttcaggtaccattcttagccaaagcatctaattcagaatccatagcctttaccgaatattcagactg 222  Q
    ||||||| |||||  |||||   |  ||||| |  || || ||||||||||| || || ||||||||||| |||||||| |||| | || ||||||||||    
T  34824828 taggcttcacattgtgaggaagatcaacaatagaccaagttccattcttagctaatgcttctaattcagattccatagcttttaaccaacattcagactg 34824729  T
Q  223 acatgcttccttataggttttgggctcaatactttgtgt 261  Q
    ||  ||||| || |||||||| |||||| ||| ||||||    
T  34824728 actagcttctttgtaggtttttggctcagtacattgtgt 34824690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 261
Target Start/End: Complemental strand, 33460771 - 33460533
Alignment:
Q  23 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 122  Q
    |||||||||||||||||||| || || |||| |||  |||||||| | |  || || |||||  |||| |  || || ||||||||||| ||||| || |    
T  33460771 ccttcaacttgattatatcctttagccaccagtctagctttgtatctctttatactgccatcttccttgtgcttaattttataaacccacttactaccaa 33460672  T
Q  123 taggcttgacattaggaggagtttgcacaattgttcaggtaccattcttagccaaagcatctaattcagaatccatagcctttaccgaatattcagactg 222  Q
    ||||||| |||||  |||||   |  ||||| |  || || ||||||||| | || || ||||||||||| |||||||| |||| | || ||||||||||    
T  33460671 taggcttcacattgtgaggaagatcaacaatagaccaagttccattcttacctaatgcttctaattcagattccatagcttttaaccaacattcagactg 33460572  T
Q  223 acatgcttccttataggttttgggctcaatactttgtgt 261  Q
    ||  ||||| ||||||||||| |||||| ||| ||||||    
T  33460571 actagcttctttataggtttttggctcagtacattgtgt 33460533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 261
Target Start/End: Original strand, 5374237 - 5374333
Alignment:
Q  164 ccattcttagccaaagcatctaattcagaatccatagcctttaccgaatattcagactgacatgcttccttataggttttgggctcaatactttgtgt 261  Q
    ||||||||||| ||||| ||||||||| ||| ||| ||  ||| | |||  |||||||||||||||| |||||||||||| |||||| ||||||||||    
T  5374237 ccattcttagctaaagcctctaattca-aattcattgcagttaaccaatgctcagactgacatgcttacttataggtttttggctcagtactttgtgt 5374333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 25420574 - 25420621
Alignment:
Q  214 ttcagactgacatgcttccttataggttttgggctcaatactttgtgt 261  Q
    |||||||||||||||||| |||||||||||||| ||| ||||||||||    
T  25420574 ttcagactgacatgcttctttataggttttgggttcagtactttgtgt 25420621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 26134517 - 26134405
Alignment:
Q  23 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 122  Q
    ||||||||||||||||| || || || |||| |||| |  ||||  | || ||||||||||| ||||||| |||||| ||||| ||||| ||||| || |    
T  26134517 ccttcaacttgattatagcctttagccaccagtctggccatgtacctctctatgctcccatctgccttatgtttgattttatacacccatttactaccaa 26134418  T
Q  123 taggcttgacatt 135  Q
    |||| ||||||||    
T  26134417 taggtttgacatt 26134405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 19717705 - 19717939
Alignment:
Q  16 atcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaatta 115  Q
    ||||| |||||||||||||||||| |||||  | |||| |||  | |||||| ||||||| || |||||| | |||| |||||||||||| ||||| ||     
T  19717705 atcaataccttcaacttgattataacccttaaccaccagtcttgccttgtatctttcaatactaccatcaactttatgtttgatcttatacacccatttg 19717804  T
Q  116 ctccctataggcttgacattaggaggagtttgcacaattgttcaggtaccattcttagccaaagcatctaattcagaatccatagcctttaccgaatatt 215  Q
    || || || ||||| | |||||| |||   |  |||||||| || || ||||||| | | || |||||||||||| ||| ||||||||||| | |||  |    
T  19717805 cttccaattggcttaatattaggtggaagatcaacaattgtccaagttccattctaatcgaatgcatctaattcaaaattcatagcctttaaccaatgct 19717904  T
Q  216 cagactgacatgcttccttataggttttgggctca 250  Q
    |||||||||| || ||||| |||||||| ||||||    
T  19717905 cagactgacaagcctccttgtaggtttttggctca 19717939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0779 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0779
Description:

Target: scaffold0779; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 4774 - 4719
Alignment:
Q  214 ttcagactgacatgcttccttataggttttgggctcaatactttgtgtaatagaaa 269  Q
    ||||||||||||||| || |||||||||||||||||| ||||||||||||| ||||    
T  4774 ttcagactgacatgcctctttataggttttgggctcagtactttgtgtaatggaaa 4719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 276
Target Start/End: Original strand, 18499115 - 18499177
Alignment:
Q  214 ttcagactgacatgcttccttataggttttgggctcaatactttgtgtaatagaaagagaaaa 276  Q
    |||| |||||||||| || |||||||||||||||||| ||||||||||||| |||| ||||||    
T  18499115 ttcaaactgacatgcctctttataggttttgggctcagtactttgtgtaatggaaatagaaaa 18499177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 276
Target Start/End: Original strand, 26360786 - 26360848
Alignment:
Q  214 ttcagactgacatgcttccttataggttttgggctcaatactttgtgtaatagaaagagaaaa 276  Q
    ||||||||||||||| || |||||||||||||||||| ||||| ||||||| |||| ||||||    
T  26360786 ttcagactgacatgcctctttataggttttgggctcagtacttcgtgtaatggaaatagaaaa 26360848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 94855 - 94970
Alignment:
Q  16 atcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaatta 115  Q
    ||||| |||||||||||||||||| || || || |||| |||| | |||||  | || ||||||||||| ||||||| |||||| ||||| ||||| |||    
T  94855 atcaataccttcaacttgattatagcctttagccaccagtctggccttgtacctctctatgctcccatctgccttatgtttgattttatacacccattta 94954  T
Q  116 ctccctataggcttga 131  Q
    || || ||||| ||||    
T  94955 ctaccaataggtttga 94970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 13989062 - 13988947
Alignment:
Q  16 atcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaatta 115  Q
    ||||| |||||||||||||||||| || || || |||| |||| | |||||  | || ||||||||||| ||||||| |||||| ||||| ||||| |||    
T  13989062 atcaataccttcaacttgattatagcctttagccaccagtctggccttgtacctctctatgctcccatctgccttatgtttgattttatacacccattta 13988963  T
Q  116 ctccctataggcttga 131  Q
    || || ||||| ||||    
T  13988962 ctaccaataggtttga 13988947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 18255032 - 18254929
Alignment:
Q  23 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 122  Q
    |||||||||||| |||| |||||||| ||||||||  |||| ||| |||| ||  ||||||| | |||||  |||||||| |||||||| || |||||||    
T  18255032 ccttcaacttgagtatagccctttgccaccaatcttgctttatatctttctatagtcccatctgacttatgcttgatcttgtaaacccatttgctcccta 18254933  T
Q  123 tagg 126  Q
    ||||    
T  18254932 tagg 18254929  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 2005640 - 2005593
Alignment:
Q  214 ttcagactgacatgcttccttataggttttgggctcaatactttgtgt 261  Q
    |||||||||||||||||| || ||||||||||| ||| ||||||||||    
T  2005640 ttcagactgacatgcttctttttaggttttgggttcagtactttgtgt 2005593  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 16257595 - 16257487
Alignment:
Q  23 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 122  Q
    ||||||||||||||||| || || || |||| |||| | |||||  | || ||||||||||| ||||||| |||||| ||||| ||||| ||||| || |    
T  16257595 ccttcaacttgattatagcctttagccaccagtctggccttgtacctctctatgctcccatctgccttatgtttgattttatacacccatttactaccaa 16257496  T
Q  123 taggcttga 131  Q
    |||| ||||    
T  16257495 taggtttga 16257487  T

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Target: scaffold0164 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 26189 - 26292
Alignment:
Q  23 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 122  Q
    |||||||||||| |||| || ||||| ||||||||  |||| ||| |||| ||  ||||||| | |||||  |||||||| |||||||| || |||||||    
T  26189 ccttcaacttgagtatagccttttgctaccaatctagctttatatctttctatagtcccatctgacttatgcttgatcttgtaaacccatttgctcccta 26288  T
Q  123 tagg 126  Q
    ||||    
T  26289 tagg 26292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 49640116 - 49640219
Alignment:
Q  23 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 122  Q
    |||||||||||| |||| || ||||| ||||||||  |||| ||| |||| ||  ||||||| | |||||  |||||||| |||||||| || |||||||    
T  49640116 ccttcaacttgagtatagccttttgctaccaatctagctttatatctttctatagtcccatctgacttatgcttgatcttgtaaacccatttgctcccta 49640215  T
Q  123 tagg 126  Q
    ||||    
T  49640216 tagg 49640219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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