View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8061_low_59 (Length: 285)

Name: NF8061_low_59
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8061_low_59
NF8061_low_59
[»] chr7 (4 HSPs)
chr7 (9-270)||(27244514-27244763)
chr7 (40-129)||(27282630-27282718)
chr7 (221-270)||(27255187-27255236)
chr7 (221-270)||(27266614-27266663)
[»] chr1 (2 HSPs)
chr1 (75-270)||(14888659-14888857)
chr1 (176-270)||(14883392-14883486)


Alignment Details
Target: chr7 (Bit Score: 181; Significance: 8e-98; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 27244514 - 27244763
Alignment:
Q  9 gaagaatatcagcgaaattttttcatcttatcttgtttggttttctctaacattttcattaatcgtttttgagagtcgtttcccattgttctagtctttt 108  Q
    |||||| |||| ||||||||||||||||||||||||||||||||            ||||||||||| ||||||||||||||||||||||||||||||||    
T  27244514 gaagaagatcaacgaaattttttcatcttatcttgtttggtttt------------cattaatcgttattgagagtcgtttcccattgttctagtctttt 27244601  T
Q  109 cttcgaaacgtgtacttgtgagcaatcatatttttcgtttgtgttcttgcccctcaatcatattaggtaaccataaccgtaatcgtttgcaatatttaga 208  Q
    ||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||    
T  27244602 cttcgaaacgtgtacttgtgagcaatcatctttttcgtttatgtttttgcccctcaatcatattaggtaaccataaccgtaaacgtttgcaatatttgga 27244701  T
Q  209 tttagctagatggtaactatttcaatcgaactaaacttaataacaaattcaacatcatttct 270  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27244702 tttagctagatagtaactatttcaatcgaactaaacttaataacaaattcaacattatttct 27244763  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 27282630 - 27282718
Alignment:
Q  40 cttgtttggttttctctaacattttcattaatcgtttttgagagtcgtttcccattgttctagtc-ttttcttcgaaacgtgtacttgtga 129  Q
    ||||||||| |||||||||||||||||||| ||   |||||||||| ||||||||| |||||||| ||||||| |||||||||||||||||    
T  27282630 cttgtttgggtttctctaacattttcattattc--ctttgagagtcttttcccattattctagtctttttctttgaaacgtgtacttgtga 27282718  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 270
Target Start/End: Original strand, 27255187 - 27255236
Alignment:
Q  221 gtaactatttcaatcgaactaaacttaataacaaattcaacatcatttct 270  Q
    |||||||||||||||||||  ||||||||| |||||||||||||| ||||    
T  27255187 gtaactatttcaatcgaacccaacttaatagcaaattcaacatcacttct 27255236  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 270
Target Start/End: Original strand, 27266614 - 27266663
Alignment:
Q  221 gtaactatttcaatcgaactaaacttaataacaaattcaacatcatttct 270  Q
    |||||||||||||||||||  ||||||||| |||||||||||||| ||||    
T  27266614 gtaactatttcaatcgaacccaacttaatagcaaattcaacatcacttct 27266663  T

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Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 75 - 270
Target Start/End: Complemental strand, 14888857 - 14888659
Alignment:
Q  75 ttttgagagtcgtttcccattgttctagt---cttttcttcgaaacgtgtacttgtgagcaatcatatttttcgtttgtgttcttgcccctcaatcatat 171  Q
    ||||||||||| |||||||||||||||     |||||||||||||| ||||||||||||| ||  | ||||| |||| |||| |||||||||||||||      
T  14888857 ttttgagagtcttttcccattgttctatattccttttcttcgaaacctgtacttgtgagccattgtcttttttgtttatgtttttgcccctcaatcat-- 14888760  T
Q  172 taggtaaccata--accgtaatcgtttgcaatatttagatttagctagatggtaactatttcaatcgaactaaacttaataacaaattcaacatcatttc 269  Q
    ||||||||||||  ||| |||  ||||||||||||| ||||||||||||| ||||||||||||||| |||| ||||||||| ||||||||||||||||||    
T  14888759 taggtaaccatataaccataaaagtttgcaatatttggatttagctagatcgtaactatttcaatcaaactgaacttaatagcaaattcaacatcatttc 14888660  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 176 - 270
Target Start/End: Complemental strand, 14883486 - 14883392
Alignment:
Q  176 taaccataaccgtaatcgtttgcaatatttagatttagctagatggtaactatttcaatcgaactaaacttaataacaaattcaacatcatttct 270  Q
    ||||||||||| |||  ||||||||||||| ||||||||||||  |||||| ||||||||||||| ||||||||| |||||||||||||||||||    
T  14883486 taaccataaccataaaagtttgcaatatttggatttagctagaaagtaactctttcaatcgaactgaacttaatagcaaattcaacatcatttct 14883392  T

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