View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_low_6 (Length: 735)
Name: NF8061_low_6
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 9 - 540
Target Start/End: Original strand, 30855625 - 30856153
Alignment:
| Q |
9 |
aaaggaagtaactttactcgttacggtgagtatgaatgaacaatgaagcaacagtaacagtgataaccgtacaagagcaacgttacttaggaagaagggt |
108 |
Q |
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| T |
30855625 |
aaaggaagtaactttactcgttacggtgagtatgaatgaacaatgaagcaacagtaacggtgataaccgtacaagagcaacgttacttaggaagaagggt |
30855724 |
T |
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| Q |
109 |
tttgttgattctattacatgaactttacatagttaccttttcattcattcgttggatttggaggcgggaaaaagggtattgagttcttgttcttccttgt |
208 |
Q |
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| T |
30855725 |
tttgttgattctattacatgaactttacatagttaccttttcattcattcgttggatttggaggcgggaaaaagggtattgagttcttgttcttccttgt |
30855824 |
T |
|
| Q |
209 |
actttgaaaggaagaagtgttgtatggagtgtgatgattttcaagcatcattcaacaagaagaagaagtgggttttaggtaactttaatagtaccttttt |
308 |
Q |
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| T |
30855825 |
actttgaaaggaagaagtgttgtatggagtgtgatgattttcaagcatcattcaacaaga---agaagtgggttttaggtaactttaatactaccttttt |
30855921 |
T |
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| Q |
309 |
tgggggcctatcattgaatctactttgtttggggaatgattctttgagaatttttgtgatctcattcacaaatatttgtactagtggtaaaaaatttagg |
408 |
Q |
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| T |
30855922 |
tgggggcctatcattgaatctactttgtttggggaatgattctttgagaatttttgtgatctcattcacaaatatttgtactagtggtaaaaaatttagg |
30856021 |
T |
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| Q |
409 |
ttgactttttgaattgtaaaatttactttaaattggtatatatattgactattattagttaaattaggtatatggatacttttacttaaaaaataaataa |
508 |
Q |
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| T |
30856022 |
ttgactttttgaattgtaaaatttactttaaattggtatatatattgactattattagttaaattaggtatatggatacttttacttaaaaaataaataa |
30856121 |
T |
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| Q |
509 |
aaggtatatagatcatctcttcttctttgtga |
540 |
Q |
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| T |
30856122 |
aaggtatatagatcatctcttcttctttgtga |
30856153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 603 - 720
Target Start/End: Original strand, 30856216 - 30856332
Alignment:
| Q |
603 |
tggttaatattaaatgtctaatatgagtagaacatcattcgtaaaaaatcaacgaagaaccagaaacattatgagatagggaaaaaatgattttaaattg |
702 |
Q |
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| T |
30856216 |
tggttaatattaaatgtctaatatgagtagaacatcattcgtataaaatcaacgaagaatcagaaacattatgagataggg-aaaaatgattttaaattg |
30856314 |
T |
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| Q |
703 |
atgttcatatcacatatt |
720 |
Q |
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| T |
30856315 |
atgttcatatcacatatt |
30856332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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