View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_low_60 (Length: 278)
Name: NF8061_low_60
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 27444358 - 27444097
Alignment:
| Q |
1 |
taaaagttaaatttcaattgcataaggaatttaaacaataatttattcagtacattaactttacatgatcacatcgaatatataaacaagaatttgctca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27444358 |
taaaagttaaatttcaattgcataaggaatttaaacaataatttattcagtacattaactttccatgatcacatcgaatatataaacaagaatttgctca |
27444259 |
T |
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| Q |
101 |
agcgtcaccgtcccacagctcttccaaggttttgtaaggtccactatcagatacaaacatttctaccttttgcagtctgcattgtggaatctgattgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27444258 |
agcgtcaccgtcccacagctcttccaaggttttgtaaggtccactatcagatacaaacatttctaccttttgcagtctgcattgcggaatctgattgatt |
27444159 |
T |
|
| Q |
201 |
ttgtcgaattcttcttggttcaattcccaatcaaatatttcagtgtttagtttcatcctttc |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27444158 |
ttgtcgaattcttcttggttcaattcccaatcaaatatttcagtgtttagtttcatcctttc |
27444097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 27441562 - 27441312
Alignment:
| Q |
9 |
aaatttcaattgcataaggaatttaaacaataatttattcagtacattaactttacatgatcacatcgaatatataaacaagaatttgctcaagcgtcac |
108 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||| |||||||||||| ||| ||| ||| | |
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| T |
27441562 |
aaatttcacttgcataaggaatttaaacaataatttattcagtacatacacttgcattgatcccatcgaatatttaaacaagaattcgcttaagggtcgc |
27441463 |
T |
|
| Q |
109 |
cgtcccacagctcttccaaggttttgtaaggtccactatcagatacaaacatttctaccttttgcagtctgcattgtggaatctgattgattttgtcgaa |
208 |
Q |
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| T |
27441462 |
catcccacagctcttccaatgacttgtaaggtccattatcagatacaaacatttctgcctttagcagtctgcattgaggaatctgattaattttgtctaa |
27441363 |
T |
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| Q |
209 |
ttcttcttggttcaattcccaatcaaatatttcagtgtttagtttcatcct |
259 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
27441362 |
ttcttcttggttcaattcccaatcaaatatttcaatgttttgtttcatcct |
27441312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 84 - 262
Target Start/End: Complemental strand, 27430071 - 27429893
Alignment:
| Q |
84 |
aaacaagaatttgctcaagcgtcaccgtcccacagctcttccaaggttttgtaaggtccactatcagatacaaacatttctaccttttgcagtctgcatt |
183 |
Q |
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|||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| | ||||| || |
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| T |
27430071 |
aaacaagagtttgctcaaacatcaccatcccacagctcttccaaggttttgtaaggtccattatcagatacaaatatttctgccttttgaaatctgcttt |
27429972 |
T |
|
| Q |
184 |
gtggaatctgattgattttgtcgaattcttcttggttcaattcccaatcaaatatttcagtgtttagtttcatcctttc |
262 |
Q |
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| T |
27429971 |
gatgaatctgactgattttgtctaattcttcttggttcaattcccaatcaaatatttcaatgttttgtttcatcctttc |
27429893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 86 - 259
Target Start/End: Original strand, 26910817 - 26910990
Alignment:
| Q |
86 |
acaagaatttgctcaagcgtcaccgtcccacagctcttccaaggttttgtaaggtccactatcagatacaaacatttctaccttttgcagtctgcattgt |
185 |
Q |
| |
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|||||| | |||||||| |||||| ||||||||||||||||||| ||||||||||||| | ||||||| |||||||||| |||| | |||||||||||| |
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| T |
26910817 |
acaagattctgctcaagggtcaccatcccacagctcttccaaggatttgtaaggtccattttcagataaaaacatttctgccttgtatagtctgcattgt |
26910916 |
T |
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| Q |
186 |
ggaatctgattgattttgtcgaattcttcttggttcaattcccaatcaaatatttcagtgtttagtttcatcct |
259 |
Q |
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||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||| |||| |||||||||| |
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| T |
26910917 |
ggaatcttattgattttgtccaattcttcttggttcaatttccaatcaaatatttcaaggttttgtttcatcct |
26910990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 20422214 - 20422174
Alignment:
| Q |
9 |
aaatttcaattgcataaggaatttaaacaataatttattca |
49 |
Q |
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|||||||| || ||||||||||||||||||||||||||||| |
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| T |
20422214 |
aaatttcacttacataaggaatttaaacaataatttattca |
20422174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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