View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8061_low_65 (Length: 264)
Name: NF8061_low_65
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_65 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 39 - 248
Target Start/End: Original strand, 13111348 - 13111557
Alignment:
| Q |
39 |
atactacttgaggaaaatacaagcatcatgctgttcttacatgcaccattatctaaagttttaagttgttcttacatgcatcttgctgttccatcaccca |
138 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13111348 |
atactacttgaggaaaatacgagcatcatgctgttcttacatgcaccattatctaaagttttaagttgttcttacatgcatcttgctgttccatcaccca |
13111447 |
T |
|
| Q |
139 |
tgtgggttaaggtagacatgtttgaattcaagctatatttggaaaataacaatgtggttggagttcgtttgattctcaaagaaataatccattagattga |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13111448 |
tgtgggttaaggtagacatgtttgaattcaagctatatttggaaaataacaatgtggttggagttcatttgattctcaaagaaataatccattagattga |
13111547 |
T |
|
| Q |
239 |
aagatgttgt |
248 |
Q |
| |
|
|||||||||| |
|
|
| T |
13111548 |
aagatgttgt |
13111557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 39 - 248
Target Start/End: Complemental strand, 18671831 - 18671622
Alignment:
| Q |
39 |
atactacttgaggaaaatacaagcatcatgctgttcttacatgcaccattatctaaagttttaagttgttcttacatgcatcttgctgttccatcaccca |
138 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| | |
|
|
| T |
18671831 |
atactacttgaggaaaatacgagcatcatgctgttcttacatgcaccattatctaaagttttaagtggttcttacatgcatcttgcggttccatcaccga |
18671732 |
T |
|
| Q |
139 |
tgtgggttaaggtagacatgtttgaattcaagctatatttggaaaataacaatgtggttggagttcgtttgattctcaaagaaataatccattagattga |
238 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18671731 |
tgtgggttaaggtagacatgtttaaattgaagctatatatggaaaataacaatgtggttggagttcatttgattctcaaagaaataatccattagattga |
18671632 |
T |
|
| Q |
239 |
aagatgttgt |
248 |
Q |
| |
|
|||||||||| |
|
|
| T |
18671631 |
aagatgttgt |
18671622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 13004912 - 13004850
Alignment:
| Q |
180 |
gaaaataacaatgtggttggagttcgtttgattctcaaagaaataatccattagattgaaaga |
242 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
13004912 |
gaaaataacaatgtggttggagttcatttgattctcatagaaatcatccattagattgaaaga |
13004850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University