View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8061_low_74 (Length: 242)

Name: NF8061_low_74
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8061_low_74
NF8061_low_74
[»] chr5 (7 HSPs)
chr5 (17-229)||(35252191-35252403)
chr5 (84-117)||(11596398-11596431)
chr5 (148-216)||(28296309-28296379)
chr5 (136-184)||(26205756-26205805)
chr5 (146-224)||(9878038-9878118)
chr5 (148-210)||(38749571-38749635)
chr5 (147-205)||(43208281-43208341)
[»] chr4 (12 HSPs)
chr4 (147-223)||(56049851-56049928)
chr4 (83-117)||(30621752-30621786)
chr4 (146-197)||(18513247-18513300)
chr4 (137-216)||(31243545-31243626)
chr4 (147-191)||(40224505-40224550)
chr4 (154-211)||(34589720-34589779)
chr4 (147-185)||(30103364-30103402)
chr4 (167-204)||(54621805-54621843)
chr4 (84-117)||(16184917-16184950)
chr4 (84-132)||(5654503-5654551)
chr4 (147-186)||(9988706-9988746)
chr4 (147-197)||(14465301-14465353)
[»] chr3 (6 HSPs)
chr3 (163-213)||(46191369-46191420)
chr3 (136-216)||(41319306-41319388)
chr3 (85-118)||(47132179-47132212)
chr3 (84-117)||(21478778-21478811)
chr3 (84-117)||(46191283-46191316)
chr3 (147-197)||(13799504-13799556)
[»] chr6 (5 HSPs)
chr6 (146-210)||(9024182-9024248)
chr6 (135-185)||(30781289-30781340)
chr6 (83-117)||(3209485-3209519)
chr6 (136-224)||(34446538-34446628)
chr6 (85-117)||(17341622-17341654)
[»] scaffold0011 (1 HSPs)
scaffold0011 (147-223)||(240028-240106)
[»] chr1 (10 HSPs)
chr1 (136-185)||(40747769-40747819)
chr1 (147-206)||(19637759-19637820)
chr1 (83-117)||(38078600-38078634)
chr1 (146-210)||(39828258-39828324)
chr1 (84-113)||(12455285-12455314)
chr1 (155-199)||(14332407-14332452)
chr1 (147-205)||(2445862-2445922)
chr1 (154-208)||(3921656-3921712)
chr1 (146-185)||(30847726-30847766)
chr1 (84-132)||(51410096-51410144)
[»] chr8 (7 HSPs)
chr8 (136-222)||(40063928-40064014)
chr8 (136-212)||(26915236-26915314)
chr8 (84-133)||(7616768-7616817)
chr8 (80-117)||(28819288-28819325)
chr8 (150-205)||(34201056-34201113)
chr8 (146-185)||(29198485-29198525)
chr8 (150-196)||(37225753-37225801)
[»] chr7 (6 HSPs)
chr7 (147-197)||(38134413-38134465)
chr7 (146-210)||(4909138-4909204)
chr7 (146-205)||(37775974-37776035)
chr7 (77-113)||(1415671-1415707)
chr7 (147-201)||(2525851-2525907)
chr7 (85-117)||(11272531-11272563)
[»] chr2 (4 HSPs)
chr2 (146-185)||(18570985-18571025)
chr2 (147-197)||(45000853-45000904)
chr2 (138-198)||(10535757-10535819)
chr2 (155-229)||(13501093-13501169)


Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 35252191 - 35252403
Alignment:
Q  17 attaaggtgattagtgttatttatacattgaaatgagcttgaagtgttgggaattttggatattgatctatgaagcacaaatactcctcggattaggcgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35252191 attaaggtgattagtgttatttatacattgaaatgagcttgtagtgttgggaattttggatattgatctatgaagcacatatactcctcggattaggcgt 35252290  T
Q  117 gcttaggtgtcggatatatgacaccaacatgacacatatgattacattaattatgtcattttctcaaatattattggtgtcgatgtgtccgtgtcatgtc 216  Q
    | | ||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  35252291 gttcaggtgtcagatatatgacaccaacatgacacatatgattacattaactatgtaattttctcaaatattattggtgtcggcgtgtccgtgtcatgtc 35252390  T
Q  217 cggtgtctctgct 229  Q
    |||||||||||||    
T  35252391 cggtgtctctgct 35252403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 11596398 - 11596431
Alignment:
Q  84 ctatgaagcacaaatactcctcggattaggcgtg 117  Q
    ||||||||||||||||||||||||||||||||||    
T  11596398 ctatgaagcacaaatactcctcggattaggcgtg 11596431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 28296379 - 28296309
Alignment:
Q  148 acacatatgattacatt-aattatgtcattttctcaaa-tattattggtgtcgatgtgtccgtgtcatgtc 216  Q
    |||||||||| |||||| |||||||||||||||||||| |||||| ||||||||  ||||| |||| ||||    
T  28296379 acacatatgagtacattgaattatgtcattttctcaaattattatcggtgtcgacttgtccatgtcgtgtc 28296309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 26205756 - 26205805
Alignment:
Q  136 gacaccaacatgacacatatgattacatt-aattatgtcattttctcaaa 184  Q
    |||||||||| ||||| |||||||||| | ||||||||||||||||||||    
T  26205756 gacaccaacacgacacctatgattacactgaattatgtcattttctcaaa 26205805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 9878038 - 9878118
Alignment:
Q  146 tgacacatatgattacatt-aattatgtcattttctcaaat-attattggtgtcgatgtgtccgtgtcatgtccggtgtct 224  Q
    |||||||  |||||||||| |||||  |||| ||||||||| |||||||||||||| ||||| ||||| ||| ||||||||    
T  9878038 tgacacaagtgattacattcaattaattcatattctcaaattattattggtgtcgacgtgtcagtgtcttgttcggtgtct 9878118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 38749571 - 38749635
Alignment:
Q  148 acacatatgattacatt-aattatgtcattttctcaaa-tattattggtgtcgatgtgtccgtgt 210  Q
    |||||||| |||||||| |||||||||||||| ||||| |||||| ||||||||  |||||||||    
T  38749571 acacatataattacattgaattatgtcattttttcaaattattatcggtgtcgacatgtccgtgt 38749635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 43208281 - 43208341
Alignment:
Q  147 gacacatatgattacatt-aattatgtcattttctcaaa-tattattggtgtcgatgtgtc 205  Q
    |||| ||||||||||||| |||||||||||||||||||| || ||| ||||| ||||||||    
T  43208281 gacagatatgattacattgaattatgtcattttctcaaattactatcggtgttgatgtgtc 43208341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 56049928 - 56049851
Alignment:
Q  147 gacacatatgattacatt-aattatgtcattttctcaaat-attattggtgtcgatgtgtccgtgtcatgtccggtgtc 223  Q
    |||||||||||||||||| || |||||||||| ||||||| ||||| |||||||||||||||||||| |||||||||||    
T  56049928 gacacatatgattacattgaactatgtcattt-ctcaaattattatcggtgtcgatgtgtccgtgtcgtgtccggtgtc 56049851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 117
Target Start/End: Original strand, 30621752 - 30621786
Alignment:
Q  83 tctatgaagcacaaatactcctcggattaggcgtg 117  Q
    |||||||||||||||||||||||||||||||||||    
T  30621752 tctatgaagcacaaatactcctcggattaggcgtg 30621786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 18513247 - 18513300
Alignment:
Q  146 tgacacatatgattacatt-aattatgtcattttctcaaa-tattattggtgtc 197  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||| ||||||    
T  18513247 tgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 31243545 - 31243626
Alignment:
Q  137 acaccaacatgacacatatgattacatt-aattatgtcattttctcaaa-tattattggtgtcgatgtgtccgtgtcatgtc 216  Q
    ||||| ||||||||| |||||||||| | |||||||||||||||||||| ||||||  ||||||||||| | ||||| ||||    
T  31243545 acaccgacatgacacctatgattacactgaattatgtcattttctcaaattattataagtgtcgatgtgcctgtgtcgtgtc 31243626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 40224505 - 40224550
Alignment:
Q  147 gacacatatgattacattaa-ttatgtcattttctcaaatattatt 191  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||    
T  40224505 gacacatatgattacattaaattatgtcattttctcacatattatt 40224550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 34589720 - 34589779
Alignment:
Q  154 atgattacatt-aattatgtcattttctcaaa-tattattggtgtcgatgtgtccgtgtc 211  Q
    ||||||||||| |||||||||||||||||||| | |||| |||||| |||||||||||||    
T  34589720 atgattacattgaattatgtcattttctcaaattgttatcggtgtcaatgtgtccgtgtc 34589779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 30103364 - 30103402
Alignment:
Q  147 gacacatatgattacattaattatgtcattttctcaaat 185  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  30103364 gacacatatgattacactaattatgtgattttctcaaat 30103402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 54621843 - 54621805
Alignment:
Q  167 ttatgtcattttctcaaa-tattattggtgtcgatgtgt 204  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  54621843 ttatgtcattttctcaaactattattggtgtcgatgtgt 54621805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 16184950 - 16184917
Alignment:
Q  84 ctatgaagcacaaatactcctcggattaggcgtg 117  Q
    |||||||||||||| |||||||||||||||||||    
T  16184950 ctatgaagcacaaacactcctcggattaggcgtg 16184917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 5654503 - 5654551
Alignment:
Q  84 ctatgaagcacaaatactcctcggattaggcgtgcttaggtgtcggata 132  Q
    ||||||||||||||||||| |||||||||||||  |  |||||||||||    
T  5654503 ctatgaagcacaaatactcttcggattaggcgtattccggtgtcggata 5654551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 9988706 - 9988746
Alignment:
Q  147 gacacatatgattacatt-aattatgtcattttctcaaata 186  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  9988706 gacacatgtgattacattcaattatgtcattttctcaaata 9988746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 14465301 - 14465353
Alignment:
Q  147 gacacatatgattacatt-aattatgtcattttctcaaa-tattattggtgtc 197  Q
    |||||||||||||| ||| |||||||||||||||||||| |||||| ||||||    
T  14465301 gacacatatgattaaattgaattatgtcattttctcaaattattatcggtgtc 14465353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 46191369 - 46191420
Alignment:
Q  163 ttaattatgtcattttctcaaat-attattggtgtcgatgtgtccgtgtcat 213  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  46191369 ttaattatgtgattttctcaaattattattggtgtcgatgtgtccgtgtcat 46191420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 41319306 - 41319388
Alignment:
Q  136 gacaccaacatgacacatatgattacatt-aattatgtcattttctcaaat-attattggtgtcgatgtgtccgtgtcatgtc 216  Q
    |||||| ||| ||||||||  |||||||| |||||||||||||| |||||| |||||||||||||| ||||||||||| ||||    
T  41319306 gacaccgacacgacacatacaattacattgaattatgtcattttttcaaattattattggtgtcgacgtgtccgtgtcgtgtc 41319388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 47132212 - 47132179
Alignment:
Q  85 tatgaagcacaaatactcctcggattaggcgtgc 118  Q
    ||||||||||||||||||||||||||||||||||    
T  47132212 tatgaagcacaaatactcctcggattaggcgtgc 47132179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 21478811 - 21478778
Alignment:
Q  84 ctatgaagcacaaatactcctcggattaggcgtg 117  Q
    ||||||||||||||| ||||||||||||||||||    
T  21478811 ctatgaagcacaaatgctcctcggattaggcgtg 21478778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 46191283 - 46191316
Alignment:
Q  84 ctatgaagcacaaatactcctcggattaggcgtg 117  Q
    |||||||||||||||||| |||||||||||||||    
T  46191283 ctatgaagcacaaatacttctcggattaggcgtg 46191316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 13799556 - 13799504
Alignment:
Q  147 gacacatatgattaca-ttaattatgtcattttctcaaa-tattattggtgtc 197  Q
    ||||||||| |||||| |||||||||||||||||||||| |||||| ||||||    
T  13799556 gacacatattattacacttaattatgtcattttctcaaactattatcggtgtc 13799504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 9024182 - 9024248
Alignment:
Q  146 tgacacatatgattacatt-aattatgtcattttctcaaa-tattattggtgtcgatgtgtccgtgt 210  Q
    ||||||||||||||||||| |||||||||||||||||||| ||| ||| ||||||| ||||||||||    
T  9024182 tgacacatatgattacattgaattatgtcattttctcaaattatcatttgtgtcgacgtgtccgtgt 9024248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 30781289 - 30781340
Alignment:
Q  135 tgacaccaacatgacacatatgattaca-ttaattatgtcattttctcaaat 185  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||||||||||    
T  30781289 tgacaccgacatgacacctatgattacaattaattatgtcattttctcaaat 30781340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 3209519 - 3209485
Alignment:
Q  83 tctatgaagcacaaatactcctcggattaggcgtg 117  Q
    ||||||||||||||| |||||||||||||||||||    
T  3209519 tctatgaagcacaaacactcctcggattaggcgtg 3209485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 34446628 - 34446538
Alignment:
Q  136 gacaccaacatgacacatatgattacatt-aattatgtcattttctcaaa-tattattggtgtcgatgtgtccgtgtcatgtccggtgtct 224  Q
    |||||| ||| ||||| |||||||||| | |||||||||||||||||||| ||||||  |||||   ||||| ||||||||||| ||||||    
T  34446628 gacaccgacacgacacctatgattacactgaattatgtcattttctcaaattattatccgtgtcagagtgtctgtgtcatgtccagtgtct 34446538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 17341622 - 17341654
Alignment:
Q  85 tatgaagcacaaatactcctcggattaggcgtg 117  Q
    ||||||||||||| |||||||||||||||||||    
T  17341622 tatgaagcacaaacactcctcggattaggcgtg 17341654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 240028 - 240106
Alignment:
Q  147 gacacatatgattacatt-aattatgtcattttctcaaat-attattggtgtcgatgtgtccgtgtcatgtccggtgtc 223  Q
    |||||||||||||||||| |||||| | |||||||||||| ||||| | |||| |  ||||||||||||||||||||||    
T  240028 gacacatatgattacattgaattatattattttctcaaattattatagttgtcaacatgtccgtgtcatgtccggtgtc 240106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 40747769 - 40747819
Alignment:
Q  136 gacaccaacatgacacatatgattacatt-aattatgtcattttctcaaat 185  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||||||||    
T  40747769 gacaccaacatgacacctataattacattgaattatgtcattttctcaaat 40747819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 19637820 - 19637759
Alignment:
Q  147 gacacatatgattacatt-aattatgtcattttctcaaat-attattggtgtcgatgtgtcc 206  Q
    |||||||||||||||||| ||| |||||||||||| |||| ||||| |||||||||||||||    
T  19637820 gacacatatgattacattgaataatgtcattttcttaaattattatcggtgtcgatgtgtcc 19637759  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 117
Target Start/End: Original strand, 38078600 - 38078634
Alignment:
Q  83 tctatgaagcacaaatactcctcggattaggcgtg 117  Q
    |||||||||||| ||||||||||||||||||||||    
T  38078600 tctatgaagcacgaatactcctcggattaggcgtg 38078634  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 39828324 - 39828258
Alignment:
Q  146 tgacacatatgattacattaat-tatgtcattttctcaaat-attattggtgtcgatgtgtccgtgt 210  Q
    ||||| ||||||||| |||||  ||||| |||||||||||| |||||||||||||| ||||||||||    
T  39828324 tgacatatatgattagattaaagtatgttattttctcaaattattattggtgtcgacgtgtccgtgt 39828258  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 113
Target Start/End: Complemental strand, 12455314 - 12455285
Alignment:
Q  84 ctatgaagcacaaatactcctcggattagg 113  Q
    ||||||||||||||||||||||||||||||    
T  12455314 ctatgaagcacaaatactcctcggattagg 12455285  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 14332452 - 14332407
Alignment:
Q  155 tgattacatt-aattatgtcattttctcaaatattattggtgtcga 199  Q
    |||||||||| ||||||||||||||||||||| |||| ||||||||    
T  14332452 tgattacattgaattatgtcattttctcaaattttatcggtgtcga 14332407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 2445922 - 2445862
Alignment:
Q  147 gacacatatgattacatt-aattatgtcattttctcaaa-tattattggtgtcgatgtgtc 205  Q
    |||||||||||||| ||| |||||||||||||||||||| ||| |||||||| || |||||    
T  2445922 gacacatatgattaaattgaattatgtcattttctcaaattatcattggtgttgaagtgtc 2445862  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 3921712 - 3921656
Alignment:
Q  154 atgattacatt-aattatgtcattttctcaaa-tattattggtgtcgatgtgtccgt 208  Q
    ||||||||||| |||||||||||||||||||| |||||||| ||| || ||||||||    
T  3921712 atgattacattgaattatgtcattttctcaaattattattgatgttgacgtgtccgt 3921656  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 30847726 - 30847766
Alignment:
Q  146 tgacacatatgattacatt-aattatgtcattttctcaaat 185  Q
    ||||||||||||||||||| |||||||||||||| ||||||    
T  30847726 tgacacatatgattacattgaattatgtcattttttcaaat 30847766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 51410144 - 51410096
Alignment:
Q  84 ctatgaagcacaaatactcctcggattaggcgtgcttaggtgtcggata 132  Q
    ||||||||||| ||||||||| ||||||||||||  | |||||||||||    
T  51410144 ctatgaagcacgaatactccttggattaggcgtgtctcggtgtcggata 51410096  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 40064014 - 40063928
Alignment:
Q  136 gacaccaacatgacacatatgattacatt-aattatgtcattttctcaaa-tattattggtgtcgatgtgtccgtgtcatgtccggtgt 222  Q
    |||||| ||| ||| | |||||||||| | |||||||||||||||||||| ||||||||||||||  ||||||||||| ||||| ||||    
T  40064014 gacaccgacacgacgcctatgattacaatgaattatgtcattttctcaaattattattggtgtcg--gtgtccgtgtcgtgtccagtgt 40063928  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 26915236 - 26915314
Alignment:
Q  136 gacaccaacatgacacatatgattacattaa-ttatgtcattttctc-aaatattattggtgtcgatgtgtccgtgtca 212  Q
    |||||| ||| ||||| | |||||||||||| ||||||||||||||| |||| ||||  ||||||| ||||||||||||    
T  26915236 gacaccgacacgacacttgtgattacattaaattatgtcattttctcaaaattttatccgtgtcgacgtgtccgtgtca 26915314  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 7616768 - 7616817
Alignment:
Q  84 ctatgaagcacaaatactcctcggattaggcgtgcttaggtgtcggatat 133  Q
    |||||||||||| |||||||| ||||||||||||   |||||||||||||    
T  7616768 ctatgaagcacatatactcctgggattaggcgtgtccaggtgtcggatat 7616817  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 28819325 - 28819288
Alignment:
Q  80 tgatctatgaagcacaaatactcctcggattaggcgtg 117  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  28819325 tgatctatgaagcacatatactcctcggattagccgtg 28819288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 34201056 - 34201113
Alignment:
Q  150 acatatgattacatt-aattatgtcattttctcaaa-tattattggtgtcgatgtgtc 205  Q
    |||||| |||||||| |||||||||||||||||||| ||||||| ||||| |||||||    
T  34201056 acatataattacattgaattatgtcattttctcaaattattattagtgtcaatgtgtc 34201113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 29198485 - 29198525
Alignment:
Q  146 tgacacatatgattacatt-aattatgtcattttctcaaat 185  Q
    |||| |||||||||||||| |||||||||||||||||||||    
T  29198485 tgacgcatatgattacattgaattatgtcattttctcaaat 29198525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 37225753 - 37225801
Alignment:
Q  150 acatatgattacatt-aattatgtcattttctcaaa-tattattggtgt 196  Q
    ||||||||||||||| |||||||| ||||||||||| ||||||||||||    
T  37225753 acatatgattacattgaattatgttattttctcaaattattattggtgt 37225801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 38134413 - 38134465
Alignment:
Q  147 gacacatatgattacatt-aattatgtcattttctcaaa-tattattggtgtc 197  Q
    |||||||||||||||||| |||||||||||||||||||| |||||| ||||||    
T  38134413 gacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 38134465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 4909204 - 4909138
Alignment:
Q  146 tgacacatatgattacatt-aattatgtcattttctcaaa-tattattggtgtcgatgtgtccgtgt 210  Q
    ||||||||||||||||| | |||||||| ||||||||||| ||||||||||||| |  |||||||||    
T  4909204 tgacacatatgattacaatgaattatgtaattttctcaaattattattggtgtcaacctgtccgtgt 4909138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 37776035 - 37775974
Alignment:
Q  146 tgacacatatgattacatt-aattatgtcattttctcaaa-tattattggtgtcgatgtgtc 205  Q
    |||||||| |||||||||| |||||||||||||||||||| || || |||||||||| ||||    
T  37776035 tgacacatgtgattacatttaattatgtcattttctcaaattactactggtgtcgatttgtc 37775974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 1415707 - 1415671
Alignment:
Q  77 tattgatctatgaagcacaaatactcctcggattagg 113  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  1415707 tattgatctttgaagcacaaatactcttcggattagg 1415671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 2525851 - 2525907
Alignment:
Q  147 gacacatatgattacatt-aattatgtcattttctcaaa-tattattggtgtcgatg 201  Q
    |||||||||||||| ||| ||||||||||||| |||||| |||||| ||||||||||    
T  2525851 gacacatatgattatattgaattatgtcatttgctcaaattattatcggtgtcgatg 2525907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 11272531 - 11272563
Alignment:
Q  85 tatgaagcacaaatactcctcggattaggcgtg 117  Q
    ||||||||||| |||||||||||||||||||||    
T  11272531 tatgaagcacagatactcctcggattaggcgtg 11272563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 18571025 - 18570985
Alignment:
Q  146 tgacacatatgattacatt-aattatgtcattttctcaaat 185  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  18571025 tgacacatatgattacattgaattatgtcattttctcaaat 18570985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 45000853 - 45000904
Alignment:
Q  147 gacacatatgattacatt-aattatgtcattttctcaaatattattggtgtc 197  Q
    |||||||||||||||||| |||| |||||||||||||||| |||| ||||||    
T  45000853 gacacatatgattacattgaattgtgtcattttctcaaattttatcggtgtc 45000904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 10535757 - 10535819
Alignment:
Q  138 caccaacatgacacatatgattacatt-aattatgtcattttctcaaa-tattattggtgtcg 198  Q
    |||||||| ||||| |||||||||| | |||||||||||||||||||| |||||| |||||||    
T  10535757 caccaacacgacacttatgattacactgaattatgtcattttctcaaattattatcggtgtcg 10535819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 13501093 - 13501169
Alignment:
Q  155 tgattacatt-aattatgtcattttctcaaa-tattattggtgtcgatgtgtccgtgtcatgtccggtgtctctgct 229  Q
    |||||||||| |||||||||||||||| ||| | |||| || ||||||||||||||||  |||| ||||||| ||||    
T  13501093 tgattacattgaattatgtcattttcttaaaattttatcggcgtcgatgtgtccgtgttgtgtctggtgtctgtgct 13501169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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