View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8061_low_77 (Length: 236)
Name: NF8061_low_77
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_77 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 7 - 235
Target Start/End: Complemental strand, 21721791 - 21721562
Alignment:
| Q |
7 |
tttggtggtgttgatttgaattcttaaagtgcgttcattctcaatatctcaagcttaattttttccgata-caattaccagaaaaaagtaaatgactcat |
105 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||||||||| ||||| |||||| |||||||||| ||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
21721791 |
tttggtggtgttgacttaaatccttaaagtgcgttcattttcaatgtctcaaatttaatttttttcgatatcaattaccataaaaaagtaaatgactcat |
21721692 |
T |
|
| Q |
106 |
tattagagatgctgtgataaaagactgagggagtagtaaaaaagtatggagatgcttctccatcccaatgcaaaacaagcatagtccaaaaactacggct |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21721691 |
tattagagatgctgtgataaaagactgagggagtagtaaaaaagtatggagatgcttctccatcccaatgcaaaagaagcatagtccaaaaactacggct |
21721592 |
T |
|
| Q |
206 |
ttgaaactgagaagaaagggaattcaactc |
235 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
21721591 |
ttggaactgagaagaaagggaattcaactc |
21721562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University