View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_low_78 (Length: 232)
Name: NF8061_low_78
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_78 |
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Alignment Details
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 37791348 - 37791237
Alignment:
| Q |
4 |
acataaaatattaaaaggttacaagagaatatatataaaacttaatgaattttactaacttaaaaacataaatgattcaatggtataaatataatcttat |
103 |
Q |
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| T |
37791348 |
acataacatattaaaaggttacaagagaatatatataaaacttaatgaattttactaacttagaaacataaatggctcaatggtataagtataatcttat |
37791249 |
T |
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| Q |
104 |
tatctaacatct |
115 |
Q |
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| T |
37791248 |
tatctaacatct |
37791237 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 24727086 - 24727049
Alignment:
| Q |
15 |
taaaaggttacaagagaatatatataaaacttaatgaa |
52 |
Q |
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| T |
24727086 |
taaaaggttacaagagagtatatataaaacataatgaa |
24727049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 9365123 - 9365156
Alignment:
| Q |
16 |
aaaaggttacaagagaatatatataaaacttaat |
49 |
Q |
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| T |
9365123 |
aaaaggttacaagagaatatatataaaacctaat |
9365156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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