View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_low_8 (Length: 652)
Name: NF8061_low_8
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 46 - 412
Target Start/End: Complemental strand, 29421694 - 29421328
Alignment:
| Q |
46 |
tatccacaaaactatgccaatctaaacaaagtaccgaccagccaatgtaacataaatgagccagcaagcagattcagccaacaacaaaatgattagctag |
145 |
Q |
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| T |
29421694 |
tatccacaaaactatgccaatctaaacaaagtaccgaccagccaatgtaacataaatgagccagcaagcagattcagccagcaacaaaatgattagctag |
29421595 |
T |
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| Q |
146 |
aaactaaacacaacactgtggtagagtcttgtagttgattcatcttgattaattactaaacaag-ttactaactcagcagcaagaattaacaactcggta |
244 |
Q |
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| T |
29421594 |
aaactaaacacaacactctggtagagttttgtagttgattcatcttgattaattactaaacaagtttactaactcagcagcaagaattaacaactcggta |
29421495 |
T |
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| Q |
245 |
tggatttaagatcatcgacaaaaatctggnnnnnnntatatattatagaggaaaaagtattggcaaagacctaataagttaatcttcaaatttaaaagga |
344 |
Q |
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| T |
29421494 |
tggatttaagatcatcgacaaaaatctgg-aaaaaatatatattatagaggaaaaagtattggcaaagacctaataagttaatcttcaaatttaaaaggg |
29421396 |
T |
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| Q |
345 |
aatcaagacagcttcaaacagctagccatcaacacaaaaaattcaagtttcaacaaatgcataaaagg |
412 |
Q |
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| T |
29421395 |
aaccaagacagcttcaaacagctagccatcaacacaaaaaattcaagtttcaacaaatgcataaaagg |
29421328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 339 - 525
Target Start/End: Complemental strand, 29457327 - 29457141
Alignment:
| Q |
339 |
aaaggaaatcaagacagcttcaaacagctagccatcaacacaaaaaattcaagtttcaacaaatgcataaaaggtgttggtcgttgtagataatatcatt |
438 |
Q |
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| T |
29457327 |
aaagggaatcaagacatgttccaacagctagccatcagcacaaaagatccaagtttcaaataatgcataaaaggtgttggtcattgtagataatatcatt |
29457228 |
T |
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| Q |
439 |
atcttaggagttctcttttattaagaatttgaattatagatctatgatcagatctaaattacaattcttcgatatgaattcttaggg |
525 |
Q |
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| T |
29457227 |
atcttaggagttcacttttattaagaatttgaattatagatctatgattagatttgaattacaatccgttgatatgaattcttaggg |
29457141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 522 - 636
Target Start/End: Complemental strand, 29421330 - 29421219
Alignment:
| Q |
522 |
aggggcttggaggtgttctctcatcatgagcaaggatgcctttggtattagacgtgtctcatgtctgacatgtgtcaattgactagcgccaacttaaatt |
621 |
Q |
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| T |
29421330 |
aggggcttggaggtgttctctcat---gagcaaggacgcctttggtattaggcgtgtctcatgtctgacatgtgtcaattgactagcgccaacttaaatt |
29421234 |
T |
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| Q |
622 |
gaaatacgaagatct |
636 |
Q |
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| T |
29421233 |
gaaatacgaagatct |
29421219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 409 - 523
Target Start/End: Complemental strand, 29419015 - 29418901
Alignment:
| Q |
409 |
aaggtgttggtcgttgtagataatatcattatcttaggagttctcttttattaagaatttgaattatagatctatgatcagatctaaattacaattcttc |
508 |
Q |
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|||||||||| | |||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||| ||| | ||| || ||||||||||| | |
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| T |
29419015 |
aaggtgttggccattgtagattatatcattatcttaggagttatcttttattaggaatttgaattatagatttataactagagctgaattacaattcatt |
29418916 |
T |
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| Q |
509 |
gatatgaattcttag |
523 |
Q |
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| T |
29418915 |
gatataaattcttag |
29418901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 29457708 - 29457654
Alignment:
| Q |
49 |
ccacaaaactatgccaatctaaacaaagtaccgaccagccaatgtaacataaatg |
103 |
Q |
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||||||||||| |||||| ||||||||||| ||||||||||||| |||||||| |
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| T |
29457708 |
ccacaaaactaagccaataaaaacaaagtactaaccagccaatgtagcataaatg |
29457654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 29457467 - 29457415
Alignment:
| Q |
289 |
atagaggaaaaagtattggcaaagacctaataagttaatcttcaaatttaaaa |
341 |
Q |
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|||||||||||||||||||||||| | ||| ||||||| ||| ||||||||| |
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| T |
29457467 |
atagaggaaaaagtattggcaaagtcgtaagaagttaagtttccaatttaaaa |
29457415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 409 - 523
Target Start/End: Complemental strand, 24337752 - 24337638
Alignment:
| Q |
409 |
aaggtgttggtcgttgtagataatatcattatcttaggagttctcttttattaagaatttgaattatagatctatgatcagatctaaattacaattcttc |
508 |
Q |
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||||||||| || |||||||| |||| ||||||||| ||||| ||||| |||| ||||||||||||||||||| ||||||||| ||||||||| | | |
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| T |
24337752 |
aaggtgttgctcattgtagattatataattatcttaagagttatctttaattagcaatttgaattatagatctacaatcagatctgaattacaatccatt |
24337653 |
T |
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| Q |
509 |
gatatgaattcttag |
523 |
Q |
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||||| ||||||||| |
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| T |
24337652 |
gatattaattcttag |
24337638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 409 - 503
Target Start/End: Complemental strand, 24412345 - 24412251
Alignment:
| Q |
409 |
aaggtgttggtcgttgtagataatatcattatcttaggagttctcttttattaagaatttgaattatagatctatgatcagatctaaattacaat |
503 |
Q |
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||||||||| || |||||||| |||| |||||| || ||||| ||||| |||| |||||||||||||||||||| ||||||||| |||| |||| |
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| T |
24412345 |
aaggtgttgctcattgtagattatataattatcataagagttatctttaattagcaatttgaattatagatctataatcagatctcaattgcaat |
24412251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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