View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_low_80 (Length: 231)
Name: NF8061_low_80
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_80 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 49831931 - 49831733
Alignment:
| Q |
19 |
atagcccctataagcccctgggttagagaacttctgcttggtctcctcaggtagatcaaacaatgatttcataccagtgaacattttttcacgtaattca |
118 |
Q |
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| T |
49831931 |
atagcccctataagcccctgggttagagaacttctgcttggtctcctcaggtagatcaaacaatgatttcataccagtgaacattttttcacgtaattca |
49831832 |
T |
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| Q |
119 |
tttggtatttcatcacactttaagaagaagcaaccataactctcaaatgcttctctcactttcttgctcatttctttccacccttcactgccttcttct |
217 |
Q |
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| T |
49831831 |
tttggtatttcatcacactttaagaagaagcaaccatgactctcaaatgcttctctcactttcttgctcatttctttccacccttcactgccttcttct |
49831733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 50 - 217
Target Start/End: Original strand, 6939435 - 6939602
Alignment:
| Q |
50 |
ttctgcttggtctcctcaggtagatcaaacaatgatttcataccagtgaacattttttcacgtaattcatttggtatttcatcacactttaagaagaagc |
149 |
Q |
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| T |
6939435 |
ttctccttggtgtcttcaggcagatcaaacaaagatttcattcctgtgaacaattgtccacataattcctttgagatttcatcacattttaagaggaagc |
6939534 |
T |
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| Q |
150 |
aaccataactctcaaatgcttctctcactttcttgctcatttctttccacccttcactgccttcttct |
217 |
Q |
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| T |
6939535 |
aacctcgactctcaaatgcttctctcactttcttgctcatttctttccacccttcactccctttttct |
6939602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 6932005 - 6932189
Alignment:
| Q |
23 |
cccctataagcccctgggttagagaacttctgcttggtctcctcaggtagatcaaacaatgatttcataccagtgaacattttttcacgtaattcatttg |
122 |
Q |
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| T |
6932005 |
cccctataagcatttgggctaaagaacttctgcttagtctcctcgggtagatcaaacaatgatttcatgcctgtgaacaattcttcacgtgattgattca |
6932104 |
T |
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| Q |
123 |
gtatttcatcacactttaagaagaagcaaccataactctcaaatgcttctctcactttcttgctcatttctttccacccttcact |
207 |
Q |
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| T |
6932105 |
agatttcatcaccccttacgatgaaacaaccatgattctcaaatgcttctctcactttcttgcacatttctttccatccttcact |
6932189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 12458966 - 12458883
Alignment:
| Q |
130 |
atcacactttaagaagaagcaaccataactctcaaatgcttctctcactttcttgctcatttctttccacccttcactgccttc |
213 |
Q |
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| T |
12458966 |
atcacacattaagaagaagcaaccatgactctcacatgcttctctcacttttttgctcatctttttccactcctcactcccttc |
12458883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 2096340 - 2096427
Alignment:
| Q |
128 |
tcatcacactttaagaagaagcaaccataactctcaaatgcttctctcactttcttgctcatttctttccacccttcactgccttctt |
215 |
Q |
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|||||| || ||| || ||||||||||| ||||||| |||||||||||||||| |||||||||| ||||||| | ||||| ||||||| |
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| T |
2096340 |
tcatcatacattatgatgaagcaaccatgactctcacatgcttctctcacttttttgctcatttttttccactcctcactcccttctt |
2096427 |
T |
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