View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_low_82 (Length: 230)
Name: NF8061_low_82
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_82 |
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Alignment Details
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 168
Target Start/End: Original strand, 48088940 - 48089085
Alignment:
| Q |
21 |
acaaacatcctattcatcgtcaggttcgttggtatccccccaaagatggt-atatgaaagttaatgtggatggttcctctttcgatagcccaggtagtgc |
119 |
Q |
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| T |
48088940 |
acaaacatc-tatttattgttaggtttgttggtatccccaca--gatggttatataaaagttaacgtggatgattcctctttcggtaacccatgcaatgc |
48089036 |
T |
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| Q |
120 |
aggtttcggcggccttttaagaaatcattatggaggttggattcaaggt |
168 |
Q |
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| T |
48089037 |
aagtttcggtggccttttaagaaatcattatgggggttggattcaaggt |
48089085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 31837176 - 31837026
Alignment:
| Q |
19 |
agacaaacatcctattcatcgtcaggttcgttggtatccccccaaagat-ggtatatgaaagttaatgtggatggttcctctttcgatagcccaggtagt |
117 |
Q |
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| T |
31837176 |
agacaaacatcctattcatcgccaggttcgttggtatccccctgcatatagttatgtaaaagttaacatggatggttcttcattcggtaactcaggcaat |
31837077 |
T |
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| Q |
118 |
gcaggtttcggcggccttttaagaaatcattatggaggttggattcaaggt |
168 |
Q |
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| T |
31837076 |
gcaagtttcaacgaccttttaagaaatcattatgagggttggattcaaggt |
31837026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 55883490 - 55883411
Alignment:
| Q |
76 |
aaagttaatgtggatggttcctctttcgatagcccaggtagtgcaggtttcggcggccttttaagaaatcattatggagg |
155 |
Q |
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| T |
55883490 |
aaagttaatgtggatggttcctctttcgataacctagggaatgcgggttttggcggtcttataataaatcatcatggagg |
55883411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 34196297 - 34196444
Alignment:
| Q |
19 |
agacaaacatcctattcatcgtcaggttcgttggtatccccccaaagatgg-tatatgaaagttaatgtggatggttcctctttcgatagcccaggtagt |
117 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||| |||||||||||| ||| ||||| |||| || || || | | |
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| T |
34196297 |
agacaaacatcctattcatcgccaggttcgttggtat-tccccaaagatggttatataaaagttaatgtgtatgactcctccttcggtaatccgggcaat |
34196395 |
T |
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| Q |
118 |
gcaggtttcggcggccttttaagaaatcattatggaggttggattcaag |
166 |
Q |
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|| ||||| |||| ||| ||||||||| ||||| | ||||||||||||| |
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| T |
34196396 |
gctggtttaggcgacctcttaagaaattattataggggttggattcaag |
34196444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 5030952 - 5031028
Alignment:
| Q |
92 |
gttcctctttcgatagcccaggtagtgcaggtttcggcggccttttaagaaatcattatggaggttggattcaaggt |
168 |
Q |
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| T |
5030952 |
gttcctctttcggtaacctagacaatgcaggtctcgacggccttttaagaaatcattatggaggttggattcaaggt |
5031028 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 28629281 - 28629331
Alignment:
| Q |
117 |
tgcaggtttcggcggccttttaagaaatcattatggaggttggattcaaggt |
168 |
Q |
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| T |
28629281 |
tgcaggcttcggcggccttttaagaaatcattatgg-ggttggattcaaggt |
28629331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 34536599 - 34536648
Alignment:
| Q |
19 |
agacaaacatcctattcatcgtcaggttcgttggtatccccccaaagatg |
68 |
Q |
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| T |
34536599 |
agacaaacatcctattcatcgccaggttcgttagtatccccccgaagatg |
34536648 |
T |
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