View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8061_low_87 (Length: 218)
Name: NF8061_low_87
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8061_low_87 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 18005212 - 18005026
Alignment:
| Q |
13 |
aagaacatgcaaaatagttatataactttgttactatgtattagaaacttcaagtttgatcacaagttccttttctccatctccttagtgaattataaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18005212 |
aagaacatgcaaaatagttatataactttgttactaagtattagaaacttcaagtttgatcacaagttccgtttctccatctccttagtgaattataaat |
18005113 |
T |
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| Q |
113 |
tattactccataggtggagaaggtacaggaagaggtggaacaccaggtatgtctccaggaggtaataatggaggagaaggtatagga |
199 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18005112 |
tattactcaataggtggagaaggtacaggaagaggtggaacaccaggtatgtctccaggaggtaataatggaggagaaggtatagga |
18005026 |
T |
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Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 20644751 - 20644565
Alignment:
| Q |
13 |
aagaacatgcaaaatagttatataactttgttactatgtattagaaacttcaagtttgatcacaagttccttttctccatctccttagtgaattataaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20644751 |
aagaacatgcaaaatagttatataactttgttactaagtattagaaacttcaagtttgatcacaagttccgtttctccatctccttagtgaattataaat |
20644652 |
T |
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| Q |
113 |
tattactccataggtggagaaggtacaggaagaggtggaacaccaggtatgtctccaggaggtaataatggaggagaaggtatagga |
199 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20644651 |
tattactcaataggtggagaaggtacaggaagaggtggaacaccaggtatgtctccaggaggtaataatggaggagaaggtatagga |
20644565 |
T |
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