View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8061_low_88 (Length: 216)

Name: NF8061_low_88
Description: NF8061
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8061_low_88
NF8061_low_88
[»] chr8 (3 HSPs)
chr8 (15-197)||(26572035-26572221)
chr8 (15-122)||(12586173-12586280)
chr8 (121-192)||(12586071-12586142)
[»] chr7 (5 HSPs)
chr7 (15-122)||(22964133-22964240)
chr7 (15-122)||(22972377-22972484)
chr7 (121-192)||(22972515-22972586)
chr7 (121-192)||(22964271-22964342)
chr7 (86-122)||(25273695-25273731)
[»] chr3 (2 HSPs)
chr3 (16-122)||(49601210-49601316)
chr3 (121-192)||(49601108-49601179)
[»] chr2 (2 HSPs)
chr2 (15-122)||(22319000-22319107)
chr2 (121-185)||(22318905-22318969)
[»] chr1 (1 HSPs)
chr1 (88-122)||(29095769-29095803)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 26572221 - 26572035
Alignment:
Q  15 aatatggatgatacctatcaaacatttaaaaagtcaaagcgcaactcggataaattttctaa----cttacattactttcaagttcaattcttctatcaa 110  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    ||||||||||||||||||||||||||||||||||    
T  26572221 aatatggatgatacctatcaaacatttaaaaagtcaaagcacaactcggagaaattttctaattaacttacattactttcaagttcaattcttctatcaa 26572122  T
Q  111 gtgattgatcgaagtgaatactgagttgcttctttgtgtaatttctttaagcccaagagacaacttttctgcatttgataaggagag 197  Q
    ||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  26572121 gtgattgatcgaagtgaatactgagttgcttctttgtgtagcttgtttaagcccaagagacaacttttctgcatttgataaggagag 26572035  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 12586280 - 12586173
Alignment:
Q  15 aatatggatgatacctatcaaacatttaaaaagtcaaagcgcaactcggataaattttctaacttacattactttcaagttcaattcttctatcaagtga 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12586280 aatatggatgatacctatcaaacatttaaaaagtcaaaacgcaactcagagaaagtttctaacttacattactttcaagttcaattcttctatcaagtga 12586181  T
Q  115 ttgatcga 122  Q
    ||||||||    
T  12586180 ttgatcga 12586173  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 12586142 - 12586071
Alignment:
Q  121 gaagtgaatactgagttgcttctttgtgtaatttctttaagcccaagagacaacttttctgcatttgataag 192  Q
    ||||||||||||||||||||||||||||||  || ||||| ||||||||| |  ||||||||||||||||||    
T  12586142 gaagtgaatactgagttgcttctttgtgtagcttgtttaaacccaagagatagtttttctgcatttgataag 12586071  T

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Target: chr7 (Bit Score: 92; Significance: 7e-45; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 22964133 - 22964240
Alignment:
Q  15 aatatggatgatacctatcaaacatttaaaaagtcaaagcgcaactcggataaattttctaacttacattactttcaagttcaattcttctatcaagtga 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22964133 aatatggatgatacctatcaaacatttaaaaagtcaaaacgcaactcagagaaagtttctaacttacattactttcaagttcaattcttctatcaagtga 22964232  T
Q  115 ttgatcga 122  Q
    ||||||||    
T  22964233 ttgatcga 22964240  T

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Target: chr7; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 22972377 - 22972484
Alignment:
Q  15 aatatggatgatacctatcaaacatttaaaaagtcaaagcgcaactcggataaattttctaacttacattactttcaagttcaattcttctatcaagtga 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22972377 aatatggatgatacctatcaaacatttaaaaagtcaaaacgcaactcagagaaagtttctaacttacattactttcaagttcaattcttctatcaagtga 22972476  T
Q  115 ttgatcga 122  Q
    ||||||||    
T  22972477 ttgatcga 22972484  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 22972515 - 22972586
Alignment:
Q  121 gaagtgaatactgagttgcttctttgtgtaatttctttaagcccaagagacaacttttctgcatttgataag 192  Q
    ||||||||||||||||||||||||||||||  || ||||| ||||||||| | |||||||||||||||||||    
T  22972515 gaagtgaatactgagttgcttctttgtgtagcttgtttaaacccaagagatagcttttctgcatttgataag 22972586  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 22964271 - 22964342
Alignment:
Q  121 gaagtgaatactgagttgcttctttgtgtaatttctttaagcccaagagacaacttttctgcatttgataag 192  Q
    ||||||||||||||||||||||||||||||   | ||||| ||||||||| | |||||||||||||||||||    
T  22964271 gaagtgaatactgagttgcttctttgtgtagcctgtttaaacccaagagatagcttttctgcatttgataag 22964342  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 25273731 - 25273695
Alignment:
Q  86 ctttcaagttcaattcttctatcaagtgattgatcga 122  Q
    ||||||||||||||| |||||||||||||||||||||    
T  25273731 ctttcaagttcaattgttctatcaagtgattgatcga 25273695  T

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Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 49601316 - 49601210
Alignment:
Q  16 atatggatgatacctatcaaacatttaaaaagtcaaagcgcaactcggataaattttctaacttacattactttcaagttcaattcttctatcaagtgat 115  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  49601316 atatggatgatacctatcaaacatttaaaaagtcaaaacgcaactcagagaaagtttctaacttacattactttcaagttcaattcttctatcaagtgat 49601217  T
Q  116 tgatcga 122  Q
    |||||||    
T  49601216 tgatcga 49601210  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 49601179 - 49601108
Alignment:
Q  121 gaagtgaatactgagttgcttctttgtgtaatttctttaagcccaagagacaacttttctgcatttgataag 192  Q
    ||||||||||||||||||||||||||||||  || ||||| || |||||| | |||||||||||||||||||    
T  49601179 gaagtgaatactgagttgcttctttgtgtagcttgtttaaacctaagagatagcttttctgcatttgataag 49601108  T

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Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 122
Target Start/End: Complemental strand, 22319107 - 22319000
Alignment:
Q  15 aatatggatgatacctatcaaacatttaaaaagtcaaagcgcaactcggataaattttctaacttacattactttcaagttcaattcttctatcaagtga 114  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  22319107 aatatggatgataccaatcaaacatttgaaaagtcaaagcgcaactcggagaaagtttttaacttacattactttcaagttcaattcttctatcaagtga 22319008  T
Q  115 ttgatcga 122  Q
    ||||||||    
T  22319007 ttgatcga 22319000  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 22318969 - 22318905
Alignment:
Q  121 gaagtgaatactgagttgcttctttgtgtaatttctttaagcccaagagacaacttttctgcatt 185  Q
    ||||||||||||||||||||||||||||||  || ||||||||||||||| | ||||||||||||    
T  22318969 gaagtgaatactgagttgcttctttgtgtagcttgtttaagcccaagagatagcttttctgcatt 22318905  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 122
Target Start/End: Original strand, 29095769 - 29095803
Alignment:
Q  88 ttcaagttcaattcttctatcaagtgattgatcga 122  Q
    ||||||||||||| |||||||||||||||||||||    
T  29095769 ttcaagttcaattgttctatcaagtgattgatcga 29095803  T

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