View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8062_high_1 (Length: 479)
Name: NF8062_high_1
Description: NF8062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8062_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 36745877 - 36746337
Alignment:
| Q |
1 |
aacgagttggtggaatcctgctcaataatcatatggcttgcatccgctttccacgcagctgtcaatttcggacaatatccttacggtggtttaatcttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36745877 |
aacgagttggtggaatcctgctcaataatcatatggcttgcatccgctttccacgcagctgtcaatttcggacaatatccttacggtggtttaatcttga |
36745976 |
T |
|
| Q |
101 |
accgaccaactatgacaaggaggttaattcctgaaaagggaaccaaagaatatgaagagatggagaaagatgaccaaagggcttatttgagaacaatcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36745977 |
accgaccaactatgacaaggaggttaattcctgaaaagggaaccaaagaatatgaagagatggagaaagatgaccaaagggcttatttgagaacaatcac |
36746076 |
T |
|
| Q |
201 |
accaaagaccgaggctctcatcgaccttacggtgatagagatattgtcaaggcatgcttctgatgaagtttacttagggaaaagagagaatgatgaatgg |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36746077 |
accaaagaccgaggctctcattgaccttacggtgatagagatattgtcaaggcatgcttctgatgaagtttacttagggaaaagagagaatgatgaatgg |
36746176 |
T |
|
| Q |
301 |
acagcagatgaaaaggcaagagtagccttcaaaaggtttgcaaagaagatggaagacatcgagnnnnnnntcgaaagcagaaacaaagaaccagatttgc |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
36746177 |
acagcagatgaaaaggcaagagtagccttcaaaaggtttgcaaagaagatggaagacatcgagaaaaaaattgaaagcagaaacaaagaaccagatttgc |
36746276 |
T |
|
| Q |
401 |
ttaaccgaactggcccggttaagatgccctacactttgcttttacctaccagtggagaagg |
461 |
Q |
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| T |
36746277 |
ttaaccgaactggcccggttaagatgccctacactttgcttttacctaccagtggagaagg |
36746337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 50 - 273
Target Start/End: Original strand, 42689650 - 42689873
Alignment:
| Q |
50 |
tccacgcagctgtcaatttcggacaatatccttacggtggtttaatcttgaaccgaccaactatgacaaggaggttaattcctgaaaagggaaccaaaga |
149 |
Q |
| |
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||||||||||||| ||||| ||||||||||||||||| ||||| || | ||||| |||||||| | || || ||| ||||||| | ||||| | | |
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| T |
42689650 |
tccacgcagctgttaattttggacaatatccttacggcggttttattctaaaccgcccaactatcagtagaagattacttcctgaggaaggaactgcaca |
42689749 |
T |
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| Q |
150 |
atatgaagagatggagaaagatgaccaaagggcttatttgagaacaatcacaccaaagaccgaggctctcatcgaccttacggtgatagagatattgtca |
249 |
Q |
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|||||| || |||| ||| | |||| |||||| |||||||||||||| || ||| || |||| || |||||| | |||||||| ||||||||| |
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| T |
42689750 |
atatgatgaaatggtgaagagtcctcaaaaggcttacttgagaacaatcacgccgaagtttcagactcttattgacctttcagtgatagaaatattgtca |
42689849 |
T |
|
| Q |
250 |
aggcatgcttctgatgaagtttac |
273 |
Q |
| |
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|| ||||||||||||||||||||| |
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| T |
42689850 |
agacatgcttctgatgaagtttac |
42689873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 42692028 - 42691979
Alignment:
| Q |
220 |
atcgaccttacggtgatagagatattgtcaaggcatgcttctgatgaagt |
269 |
Q |
| |
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||||||||| | || ||||| |||||||||||||| |||||||||||||| |
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|
| T |
42692028 |
atcgacctttccgttatagaaatattgtcaaggcacgcttctgatgaagt |
42691979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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