View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8062_high_5 (Length: 329)
Name: NF8062_high_5
Description: NF8062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8062_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 306
Target Start/End: Original strand, 43383629 - 43383943
Alignment:
| Q |
10 |
aagaatatcaagggctgtttcgccaatacaacaa------taaccgcttcttctaattctactactggaaggacattcatgacgcctcacgatgacacaa |
103 |
Q |
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| T |
43383629 |
aagaatgtcaagggctgtttcgccaatacaacaacaacaataaccgcttcttctaattctactactggaaggacgttcatgacgcctcacgatgacacaa |
43383728 |
T |
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| Q |
104 |
tgactcgtggtggaaacgtgg------aaggggaagcggttaataataatgagatgataaactgcatcatcggacacaagtgtagcatatgtttgagggt |
197 |
Q |
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| T |
43383729 |
tgactcgtggtggaaacgtggaagtggaaggggaagcggttaataataatgagatgattaactgcatcatcggacacaagtgtagcatatgtttgagggt |
43383828 |
T |
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| Q |
198 |
atttagcactggacaagcactcggtggtcataagaggtgtcattgggaaaaagtggaaccca------caacaccaacaccaacactaccatttgatttg |
291 |
Q |
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| T |
43383829 |
atttagcactggacaagcactcggtggtcataagaggtgtcattgggaaaaagtggaacccaaaacaccaacaccaacaccaacactaccatttgatttg |
43383928 |
T |
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| Q |
292 |
aatttcccttttcca |
306 |
Q |
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| T |
43383929 |
aatttcccttttcca |
43383943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 113 - 306
Target Start/End: Original strand, 25870423 - 25870613
Alignment:
| Q |
113 |
gtggaaacgtggaaggggaagcggttaataataatgaga-tgataa--actgcatcatcggacacaagtgtagcatatgtttgagggtatttagcactgg |
209 |
Q |
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|||||||||| |||||||||| |||||||| |||| | | | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25870423 |
gtggaaacgttgaaggggaagaggttaatagtaataataataataatgactgcatcatcggacacaagtgtagcatatgtttgagggtatttagcactgg |
25870522 |
T |
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| Q |
210 |
acaagcactcggtggtcataagaggtgtcattgggaaaaagtggaacccacaacaccaacaccaacactaccatttgatttgaatttcccttttcca |
306 |
Q |
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| T |
25870523 |
acaagcactcggtggtcataagaggtgtcattgggataaaggggaaccca------cgacaccaacactaccatttgatttgaatttcccttttcca |
25870613 |
T |
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