View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8062_high_7 (Length: 248)
Name: NF8062_high_7
Description: NF8062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8062_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 22887433 - 22887664
Alignment:
| Q |
9 |
gaagaatatcgaacagagtaaaggagaaaagatgaagagcttgtctgagtctttagaacaaatataatttctgaagttatttagtggttgccttattgca |
108 |
Q |
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| T |
22887433 |
gaagaaaatcgaac-gagtaaaggagaaaagatgaagagcttgtttgagtctttagaacaaatataatttctgaagttatttagtggttgccttattgca |
22887531 |
T |
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| Q |
109 |
tttgaggttttgcaggttatttcttagtttaccctttgaatctctgtgatattactgaacaataattgtagtctctcgtttactcaaaatagatacaaac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22887532 |
tttgaggttttgcaggttatttcttagtttaccctttgaatctctgtgatattactgaacaataattgtagtctctcgtttactcaaaatagatacaaac |
22887631 |
T |
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| Q |
209 |
ttggacgcagtgaagtatatacaaaatcaaaac |
241 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
22887632 |
ttggacgcaatgaagtatatacaaaatcaaaac |
22887664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 29 - 211
Target Start/End: Original strand, 22803488 - 22803673
Alignment:
| Q |
29 |
aaggagaaaagatgaagagcttgtctgagtctttagaacaaatataatttctgaagttatttagtggttgccttattgcatttg-aggttttgcaggtta |
127 |
Q |
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||||||||||||||||||||||||| |||||||||| ||||| | ||||||||||| ||||||||||||| |||||||||||| | ||||| ||||||| |
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| T |
22803488 |
aaggagaaaagatgaagagcttgtccgagtctttagcacaaacagaatttctgaagatatttagtggttggtttattgcatttgaaagtttttcaggtta |
22803587 |
T |
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| Q |
128 |
tttcttagtttaccctttgaatctctgtgatattactgaacaataattgtagtctc--tcgtttactcaaaatagatacaaacttg |
211 |
Q |
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| T |
22803588 |
tttctttgtttaccctttgaatctctatgatattactgaataataattgtagtctcgttcatctactcaaaatagatgcaaacttg |
22803673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 29 - 211
Target Start/End: Original strand, 22869986 - 22870171
Alignment:
| Q |
29 |
aaggagaaaagatgaagagcttgtctgagtctttagaacaaatataatttctgaagttatttagtggttgccttattgcatttg-aggttttgcaggtta |
127 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| ||||| | ||||||||||| ||||||||||||| |||||||||||| | ||||| ||||||| |
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| T |
22869986 |
aaggagaaaagatgaagagcttgtccgagtctttagcacaaacagaatttctgaagatatttagtggttggtttattgcatttgaaagtttttcaggtta |
22870085 |
T |
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| Q |
128 |
tttcttagtttaccctttgaatctctgtgatattactgaacaataattgtagtctc--tcgtttactcaaaatagatacaaacttg |
211 |
Q |
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| T |
22870086 |
tttctttgtttaccctttgaatctctatgatattactgaataataattgtagtctcgttcatctactcaaaatagatgcaaacttg |
22870171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 22829192 - 22829396
Alignment:
| Q |
30 |
aggagaaaagatgaagagcttgtctgagtctttagaacaaatataatttctgaagttatttagtggttgccttattgcatttg-aggttttgcaggttat |
128 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||||||||| ||||||| |||||||| |
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| T |
22829192 |
aggagaaaagatgaagagcttgtctgagtctttagcacaaacataatttctgaagttatttagtgattggtttattgcatttgaaggttttacaggttat |
22829291 |
T |
|
| Q |
129 |
ttcttagtttaccctttgaatctctgtgatattactgaacaataattgtagtctc--tcgtttactcaaaatagatacaaacttggacgcagtgaagtat |
226 |
Q |
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| T |
22829292 |
ttctttgattaccctttgaat----------ttactaaataataattgtagtgtcattcgtctactcaaaatagatgcaaacttggacccaataaagtat |
22829381 |
T |
|
| Q |
227 |
atacaaaatcaaaac |
241 |
Q |
| |
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| T |
22829382 |
aaacaaaatcaaaac |
22829396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 61 - 184
Target Start/End: Original strand, 22884871 - 22884994
Alignment:
| Q |
61 |
ttagaacaaatataatttctgaagttatttagtggttgccttattgcatttgaggttttgcaggttatttcttagtttaccctttgaatctctgtgatat |
160 |
Q |
| |
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|||| ||||||| |||| ||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
22884871 |
ttagcacaaataggatttttgaagttatttagtggttgccttatcgcatttgaaggtttgcaggttatttctttgtttaccctttgaatctctttgatat |
22884970 |
T |
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| Q |
161 |
tactgaacaataattgtagtctct |
184 |
Q |
| |
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| T |
22884971 |
tgctgaataataactgtagtctct |
22884994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 22807339 - 22807422
Alignment:
| Q |
160 |
ttactgaacaataattgtagtctc--tcgtttactcaaaatagatacaaacttggacgcagtgaagtatatacaaaatcaaaac |
241 |
Q |
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| T |
22807339 |
ttactgaataataactgtagtctcgttcatctactcaaaatagatacaaacttggacgcaataaagtatatacaaaatcaaaac |
22807422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 91 - 237
Target Start/End: Complemental strand, 21152442 - 21152293
Alignment:
| Q |
91 |
agtggttgccttattgcatttga-ggttttgcaggttatttcttagtttaccctttgaatctctgtgatattactgaacaataattgtagtctc--tcgt |
187 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| || | ||||||||| ||||| | ||||||||||||| ||||||||||||||| |||| |
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| T |
21152442 |
agtggttgccttattgcatttgaaggttttgcaggttatttatttggttaccctttaaatctttatgatattactgaataataattgtagtctcattcgt |
21152343 |
T |
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| Q |
188 |
ttactcaaaatagatacaaacttggacgcagtgaagtatatacaaaatca |
237 |
Q |
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|||||||||||| ||||||||||||| || ||| |||||| |||||||| |
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| T |
21152342 |
ctactcaaaataggtacaaacttggacacaatgaggtatatgcaaaatca |
21152293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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