View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8062_low_11 (Length: 233)
Name: NF8062_low_11
Description: NF8062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8062_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 1723848 - 1723654
Alignment:
| Q |
17 |
atatagatacaagaaataaatggaagactacatatgattattagaatagtaaaagtgaactcaacttccccagaaagacctaggagcaagatcaaaaggc |
116 |
Q |
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| T |
1723848 |
atatagatacaagaaataaatggaagactacatatgattattagaatagtaaaagtgaactcaacttccccataaagacctaggagcaagatcaaaaggc |
1723749 |
T |
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| Q |
117 |
taaactctagcaagaatattaatgctaaccaaatgaaataactttatgtaattaaatccaaataaaaggaaacaaggataacacaatgagcttaa |
211 |
Q |
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| T |
1723748 |
taaactctaccaagaatattaatgctaaccaaatgaaataactttatgtaattaaatccaaataaaaggaaacaaggataatacaatgagcttaa |
1723654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 45249915 - 45250011
Alignment:
| Q |
90 |
aaagacctaggagcaagatcaaaaggctaaa-ctctagcaagaatattaatgctaaccaaatgaaataactttatgtaattaaatccaaataaaagga |
186 |
Q |
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| T |
45249915 |
aaagagctaggagcaagatcaaaagcctaaaactatacaaacaaaattaatgcaaatcaaatgaaacaactttatgtaattaaa-cccaataaaagga |
45250011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 1747258 - 1747062
Alignment:
| Q |
17 |
atatagatacaagaaataaatggaagactacatatgattattagaatagtaaaagtgaactcaacttcccc-agaaagacctaggagcaagatcaaaagg |
115 |
Q |
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| T |
1747258 |
atatagattcatgaaataaatggaaaaccaaatatggtta---gaatagtaaaaggggacccaacttcacctagaaagagctaagagcaatatcaaaagg |
1747162 |
T |
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| Q |
116 |
ctaaactctagcaagaatattaatgctaaccaaatgaaataactttatgtaattaaatccaaataaaaggaaacaaggataacacaatgagcttaaaatt |
215 |
Q |
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| T |
1747161 |
ctaaactctacaaagaatattaatactaaccaaatgaaataacttaatgtatttaaatccaaataaaaggaagcaagtatagcataatgagcttaaaatt |
1747062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 57 - 215
Target Start/End: Complemental strand, 1663515 - 1663356
Alignment:
| Q |
57 |
ttagaatagtaaaagtgaactcaacttcccc-agaaagacctaggagcaagatcaaaaggctaaactctagcaagaatattaatgctaaccaaatgaaat |
155 |
Q |
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||||||||||||||| | || ||||||| | ||||||| ||| |||||| ||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
1663515 |
ttagaatagtaaaaggggacccaacttcatctagaaagagctaagagcaatatcaaaaggctaaactctacaaagaatattaatactaaccaaatgaaat |
1663416 |
T |
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| Q |
156 |
aactttatgtaattaaatccaaataaaaggaaacaaggataacacaatgagcttaaaatt |
215 |
Q |
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| T |
1663415 |
aacttaatgtatttaaatccaaataaaaggaagcaagtatagcataatgagcttaaaatt |
1663356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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