View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8062_low_2 (Length: 449)
Name: NF8062_low_2
Description: NF8062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8062_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 122 - 367
Target Start/End: Original strand, 4966937 - 4967182
Alignment:
| Q |
122 |
tttatgaatgatatttttgataaacaa-ctcatttcagctctagaaaaacctgagctacataatgtcaccgaggttcctgaagtccttgaattgcctaat |
220 |
Q |
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| T |
4966937 |
tttatgaatgatatttttggtaaaaaaacttatttaaactctaaaaagacctaagctacagaaagtgtccgagtttgcttagttccttaaattgtctaat |
4967036 |
T |
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| Q |
221 |
gcacctgaaattccctaaagctagtgtaacaagtactcctcaagtttgaactacacctttcatttcattatctcaggtcatagttttctgctatctaatg |
320 |
Q |
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| T |
4967037 |
gtacataaaattcc-taaagccaatgaaacaagtactcctcaagtttgaactacatctttcattacattggctcaggtcatggttttctgctatctaatg |
4967135 |
T |
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| Q |
321 |
catgctctttgaaaggtgtgatatgatttatattaattttcaatttt |
367 |
Q |
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| T |
4967136 |
catgctcttcgatgggtgtcatatgatttatattaactttcaatttt |
4967182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 4967493 - 4967551
Alignment:
| Q |
372 |
acatgttatggtacatatttgtgtcttttatttgggccaacatgttaataaaacgaact |
430 |
Q |
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| T |
4967493 |
acatattatagtacatatttgtgtcttttatttgtgcaaccatgttgatgaaacgaact |
4967551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 6401029 - 6401111
Alignment:
| Q |
12 |
tgttatgataaaaggaaaaaagttacaaatttcacagagaaataaacctacataactatcagctatcaaacttcgggtgattt |
94 |
Q |
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| T |
6401029 |
tgttatgacaaaaggaaaaaagttacaaatttcacagagaaataaacctacataactatcagttatcaaacttcgggtaattt |
6401111 |
T |
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