View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8062_low_4 (Length: 361)
Name: NF8062_low_4
Description: NF8062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8062_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 33 - 345
Target Start/End: Original strand, 269670 - 269981
Alignment:
| Q |
33 |
ataaagaattaagttgcgagaccggataatccattaagccaattttaaacaaagaaatcaaacaatcttcttggtccataattgctatgaaacgaggaac |
132 |
Q |
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| T |
269670 |
ataaagaataaagttg--agaccagataatccattaagccaattttaaacaaagaaatcaaacaatcttcttggtccataattgctatgaaacgaggaac |
269767 |
T |
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| Q |
133 |
ttaaattcacaatnnnnnnntagccacgcagcaactacgtgagtcacgagggctctcgtggcttttgttttttcctctttaataccaatatagcataaac |
232 |
Q |
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| T |
269768 |
ttaaattcacaataaaaaaatagccacgcagcaactacgtgagtcacgagggctctcgtggcttttgttttttcctctataataccaatatagcataaac |
269867 |
T |
|
| Q |
233 |
aaataataacactagtgcgagttccacgagaggtacttaaaaattagtaaaattgtatataaatgaaagtgcttggctagtat-aagccacatacacttt |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
269868 |
aaataataacactagtgcgagttccacgagaggtacttaaaaattagtaaaattgtatataaatgaaagtgcttggctagtataaagccatatacacttt |
269967 |
T |
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| Q |
332 |
ttgtagtgaaaatt |
345 |
Q |
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|||||||||||||| |
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| T |
269968 |
ttgtagtgaaaatt |
269981 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 678331 - 678364
Alignment:
| Q |
14 |
gttatgtgaccactttaaaataaagaattaagtt |
47 |
Q |
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| T |
678331 |
gttatatgaccactttaaaataaagaattaagtt |
678364 |
T |
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