View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8062_low_6 (Length: 323)
Name: NF8062_low_6
Description: NF8062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8062_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 6 - 305
Target Start/End: Original strand, 22887643 - 22887942
Alignment:
| Q |
6 |
gaagaatatacaaaatcaaaacnnnnnnngtttaatgagaaaatgattttatgtaactattaaaccatttactcaaacatgatttcactttttagataac |
105 |
Q |
| |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22887643 |
gaagtatatacaaaatcaaaacaaaaaaagtttaatgagaaaatgattttatgtaactattaaaccatttactcaaacatgatttcactttttagataac |
22887742 |
T |
|
| Q |
106 |
aaactctctttaaccctttttaccaaaatttaatacattacaaaatcaaaatgcaccaattaagcatcaattagacgtgtcttttgaaatcaacgaccac |
205 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22887743 |
aaactctctttaatcctttttaccaaaatttaatacattacaaaatcaaaatgcaccaattaagcatcaattagacgtgtcttttgaaatcaacgaccac |
22887842 |
T |
|
| Q |
206 |
ccgagagaacagattcagcaattaacacagaagtatacggcattcttctgtcctcaacaaataattggtacccaaaagttaaaccagaagaagataaact |
305 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22887843 |
ccgagagaacagattcagcaattaacgctgaagtatatggcattctcctgtcctcaacaaataattggtacccaaaagttaaaccagaagaagataaact |
22887942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 35 - 305
Target Start/End: Original strand, 22829405 - 22829675
Alignment:
| Q |
35 |
gtttaatgagaaaatgattttatgtaactattaaaccatttactcaaacatgatttcactttttagataacaaactctctttaaccctttttaccaaaat |
134 |
Q |
| |
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|||||||||||||||| ||| ||||||||||||||| |||||||||| ||||| |||||||||||||||||||||| ||||||| || ||||| |||||| |
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| T |
22829405 |
gtttaatgagaaaatgctttcatgtaactattaaactatttactcaagcatgaattcactttttagataacaaactatctttaatccattttaacaaaat |
22829504 |
T |
|
| Q |
135 |
ttaatacattacaaaatcaaaatgcaccaattaagcatcaattagacgtgtcttttgaaatcaacgaccacccgagagaacagattcagcaattaacaca |
234 |
Q |
| |
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|| ||||||||||||| ||||| |||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||| | ||| |
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| T |
22829505 |
ctaccacattacaaaatcgaaatggaccaattaagcatcaatttcacgtgccttttgaaatcaacgaccaccagagagaacagactcagcaatagataca |
22829604 |
T |
|
| Q |
235 |
gaagtatacggcattcttctgtcctcaacaaataattggtacccaaaagttaaaccagaagaagataaact |
305 |
Q |
| |
|
||||||||||||||| | ||||||||||| ||| ||||||||||||| ||||||||||||||||||||| |
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|
| T |
22829605 |
gaagtatacggcattgtcttgtcctcaacagatacttggtacccaaaaaataaaccagaagaagataaact |
22829675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 56 - 305
Target Start/End: Original strand, 22808015 - 22808264
Alignment:
| Q |
56 |
atgtaactattaaaccatttactcaaacatgatttcactttttagataacaaactctctttaaccctttttaccaaaatttaatacattacaaaatcaaa |
155 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||| || |||||||||||| ||| |||||||||||||||| |
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|
| T |
22808015 |
atgtaactattaaactattttctcaaacatgatttcacttttcagataacaaactctctttaatccattttaccaaaatctaacacattacaaaatcaaa |
22808114 |
T |
|
| Q |
156 |
atgcaccaattaagcatcaattagacgtgtcttttgaaatcaacgaccacccgagagaacagattcagcaattaacacagaagtatacggcattcttctg |
255 |
Q |
| |
|
| |||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| |||||| | || |
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| T |
22808115 |
ccaaatcaatcaagcatcaatttcacgtgccttttgaaatcaacgaccaccagagagaacagactcagcaatagacacagaagtatatggcattgtcttg |
22808214 |
T |
|
| Q |
256 |
tcctcaacaaataattggtacccaaaagttaaaccagaagaagataaact |
305 |
Q |
| |
|
|| |||||| || |||||||||||||||||||||||||||||||||||| |
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|
| T |
22808215 |
tcttcaacacattcttggtacccaaaagttaaaccagaagaagataaact |
22808264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 75 - 305
Target Start/End: Original strand, 22838466 - 22838696
Alignment:
| Q |
75 |
tactcaaacatgatttcactttttagataacaaactctctttaaccctttttaccaaaatttaatacattacaaaatcaaaatgcaccaattaagcatca |
174 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||| || |||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
22838466 |
tacttaaacatgatttcacttttcagataacaaactctctttaatccattttaccaaaatctaacacattacaaaatcaaaatgcaccaattaagcatca |
22838565 |
T |
|
| Q |
175 |
attagacgtgtcttttgaaatcaacgaccacccgagagaacagattcagcaattaacacagaagtatacggcattcttctgtcctcaacaaataattggt |
274 |
Q |
| |
|
||| |||| |||| ||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| | ||||||||||| || ||||| |
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|
| T |
22838566 |
atttcacgtacgttttaaaatcaacgaccaccagagagaacggattcagcaatagacacagaagtatacggcattgtcttgtcctcaacacattcttggt |
22838665 |
T |
|
| Q |
275 |
acccaaaagttaaaccagaagaagataaact |
305 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| |
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|
| T |
22838666 |
acccaaaagttaaaccaaaagtagataaact |
22838696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 35 - 305
Target Start/End: Original strand, 22874301 - 22874572
Alignment:
| Q |
35 |
gtttaatgagaaaatgattttatgtaactattaaaccatttactcaaacatgatttcactttttagataacaaactctctttaaccc-tttttaccaaaa |
133 |
Q |
| |
|
|||||||||| ||| | ||| ||||| ||||||||| | |||||||||||||| ||||||||| ||||||||||||||||| || || |||||||||||| |
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|
| T |
22874301 |
gtttaatgagtaaaagctttgatgtatctattaaactacttactcaaacatgaattcacttttcagataacaaactctcttaaatccatttttaccaaaa |
22874400 |
T |
|
| Q |
134 |
tttaatacattacaaaatcaaaatgcaccaattaagcatcaattagacgtgtcttttgaaatcaacgaccacccgagagaacagattcagcaattaacac |
233 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||| ||||||| |||| |||| ||||||||||||||| |||||||| ||||||| ||| |||| |
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| T |
22874401 |
tctaacacattacaaaatcaaaatgcaccaattaaaaatcaatttcacgtacattttaaaatcaacgaccaccggagagaacggattcagaaatagacac |
22874500 |
T |
|
| Q |
234 |
agaagtatacggcattcttctgtcctcaacaaataattggtacccaaaagttaaaccagaagaagataaact |
305 |
Q |
| |
|
|||||||||||||||| | ||||||||||| || |||||||||||||||||||||| ||||||||||||| |
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|
| T |
22874501 |
agaagtatacggcattgtcttgtcctcaacacattcttggtacccaaaagttaaaccaaaagaagataaact |
22874572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 35 - 305
Target Start/End: Original strand, 22803710 - 22803980
Alignment:
| Q |
35 |
gtttaatgagaaaatgattttatgtaactattaaaccatttactcaaacatgatttcactttttagataacaaactctctttaaccctttttaccaaaat |
134 |
Q |
| |
|
||||||||| |||| | ||| ||||| |||||||| || ||||||| ||||||||||||||| ||||||||||||||||| || | ||||| |||||| |
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|
| T |
22803710 |
gtttaatgaaaaaaagctttcatgtatctattaaattatctactcaatcatgatttcacttttcagataacaaactctcttaaatcaattttaacaaaat |
22803809 |
T |
|
| Q |
135 |
ttaatacattacaaaatcaaaatgcaccaattaagcatcaattagacgtgtcttttgaaatcaacgaccacccgagagaacagattcagcaattaacaca |
234 |
Q |
| |
|
||| ||| ||||||||| ||| | |||||||||||| ||||| | ||| ||||||||||||||||||||| |||||||||||||||||||| ||||| |
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|
| T |
22803810 |
ctaacacaatacaaaatccaaacggaccaattaagcaccaatttcatgtgccttttgaaatcaacgaccaccagagagaacagattcagcaatagacaca |
22803909 |
T |
|
| Q |
235 |
gaagtatacggcattcttctgtcctcaacaaataattggtacccaaaagttaaaccagaagaagataaact |
305 |
Q |
| |
|
|||||||| |||| | | |||||||||||| | ||||| |||||||||||| ||| | ||||||||||| |
|
|
| T |
22803910 |
gaagtatatggcactgtcttgtcctcaacaagttcttggtgcccaaaagttaatccataggaagataaact |
22803980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 35 - 305
Target Start/End: Original strand, 22870208 - 22870478
Alignment:
| Q |
35 |
gtttaatgagaaaatgattttatgtaactattaaaccatttactcaaacatgatttcactttttagataacaaactctctttaaccctttttaccaaaat |
134 |
Q |
| |
|
||||||||| |||| ||| ||||| |||||||| || ||||||| ||||||||||||||| ||||||||||||||||| || | |||||||||||| |
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|
| T |
22870208 |
gtttaatgaaaaaaaactttcatgtatctattaaattatctactcaatcatgatttcacttttcagataacaaactctcttgaatctattttaccaaaat |
22870307 |
T |
|
| Q |
135 |
ttaatacattacaaaatcaaaatgcaccaattaagcatcaattagacgtgtcttttgaaatcaacgaccacccgagagaacagattcagcaattaacaca |
234 |
Q |
| |
|
||| ||| ||||||||| ||| | |||||||||||| ||||| | ||| ||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
22870308 |
ctaacacaatacaaaatccaaacggaccaattaagcaccaatttcatgtgccttttgaaatcaacgaccaccagagagaacagattcagcaatagacaca |
22870407 |
T |
|
| Q |
235 |
gaagtatacggcattcttctgtcctcaacaaataattggtacccaaaagttaaaccagaagaagataaact |
305 |
Q |
| |
|
|||||||| |||| | | |||||||||||| | ||||| |||||||||||| ||| | ||||||||||| |
|
|
| T |
22870408 |
gaagtatatggcactgtcttgtcctcaacaagttcttggtgcccaaaagttaatccataggaagataaact |
22870478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 305
Target Start/End: Original strand, 22896863 - 22896913
Alignment:
| Q |
255 |
gtcctcaacaaataattggtacccaaaagttaaaccagaagaagataaact |
305 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
22896863 |
gtcctcaaaaaattcttggtacccaaaagttaaaccagaagaagataaact |
22896913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 305
Target Start/End: Original strand, 22892547 - 22892597
Alignment:
| Q |
255 |
gtcctcaacaaataattggtacccaaaagttaaaccagaagaagataaact |
305 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22892547 |
gtcctcaaaaaattcttggtacccaaaagttaatccagaagaagataaact |
22892597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 270 - 305
Target Start/End: Original strand, 22813636 - 22813671
Alignment:
| Q |
270 |
ttggtacccaaaagttaaaccagaagaagataaact |
305 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22813636 |
ttggtacccaaaagttaatccagaagaagataaact |
22813671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 75 - 238
Target Start/End: Complemental strand, 21152255 - 21152092
Alignment:
| Q |
75 |
tactcaaacatgatttcactttttagataacaaactctctttaaccctttttaccaaaatttaatacattacaaaatcaaaatgcaccaattaagcatca |
174 |
Q |
| |
|
||||||||||| |||| || ||| ||||||||| ||||||| || || |||| |||||| ||| |||||| |||||||||||| ||| |||||||| | |
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|
| T |
21152255 |
tactcaaacatcattttacctttcagataacaatctctcttcaatccattttttcaaaatctaaaacattagaaaatcaaaatggaccgattaagcacta |
21152156 |
T |
|
| Q |
175 |
attagacgtgtcttttgaaatcaacgaccacccgagagaacagattcagcaattaacacagaag |
238 |
Q |
| |
|
||| | ||| |||||||||||| | |||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
21152155 |
atttcatgtgccttttgaaatcatcaaccaccagagagaacagattcagcaatagacacagaag |
21152092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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