View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8062_low_7 (Length: 314)

Name: NF8062_low_7
Description: NF8062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8062_low_7
NF8062_low_7
[»] chr8 (2 HSPs)
chr8 (1-299)||(38874694-38874993)
chr8 (192-236)||(31884856-31884900)
[»] chr3 (10 HSPs)
chr3 (194-270)||(25459548-25459624)
chr3 (192-233)||(51929854-51929895)
chr3 (208-271)||(37273209-37273272)
chr3 (192-233)||(53762310-53762351)
chr3 (143-175)||(584159-584191)
chr3 (195-271)||(3775770-3775846)
chr3 (192-284)||(4534291-4534382)
chr3 (185-249)||(43948751-43948815)
chr3 (140-176)||(48364835-48364871)
chr3 (140-176)||(48807811-48807847)
[»] chr7 (2 HSPs)
chr7 (193-236)||(24363517-24363560)
chr7 (198-238)||(32410648-32410688)
[»] chr4 (8 HSPs)
chr4 (208-262)||(28615608-28615662)
chr4 (195-238)||(22796763-22796806)
chr4 (208-263)||(25487489-25487544)
chr4 (195-236)||(10172172-10172213)
chr4 (146-175)||(34430626-34430655)
chr4 (197-233)||(3637299-3637335)
chr4 (194-234)||(35571549-35571589)
chr4 (196-272)||(44320023-44320099)
[»] chr2 (9 HSPs)
chr2 (192-250)||(15370239-15370297)
chr2 (194-298)||(32821858-32821961)
chr2 (191-239)||(33503105-33503153)
chr2 (195-250)||(11513992-11514047)
chr2 (207-250)||(14302918-14302961)
chr2 (194-236)||(10285970-10286012)
chr2 (143-172)||(9395245-9395274)
chr2 (192-236)||(40759270-40759314)
chr2 (192-232)||(42868397-42868437)
[»] chr6 (7 HSPs)
chr6 (194-271)||(8010432-8010509)
chr6 (189-262)||(31461756-31461829)
chr6 (191-234)||(103542-103585)
chr6 (194-234)||(835179-835219)
chr6 (192-236)||(12111077-12111121)
chr6 (143-175)||(12111080-12111112)
chr6 (143-175)||(31338090-31338122)
[»] chr1 (9 HSPs)
chr1 (195-250)||(12763419-12763475)
chr1 (140-175)||(42556528-42556563)
chr1 (197-271)||(4549462-4549536)
chr1 (192-234)||(37631475-37631517)
chr1 (138-175)||(40591051-40591088)
chr1 (194-234)||(11695974-11696014)
chr1 (143-175)||(11695975-11696007)
chr1 (140-176)||(24279861-24279897)
chr1 (143-175)||(29723602-29723634)
[»] chr5 (7 HSPs)
chr5 (143-190)||(31723903-31723950)
chr5 (195-250)||(36326104-36326159)
chr5 (146-176)||(1899265-1899295)
chr5 (195-233)||(9174929-9174967)
chr5 (208-293)||(11457152-11457236)
chr5 (193-234)||(16937800-16937841)
chr5 (192-236)||(6938649-6938693)


Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 38874993 - 38874694
Alignment:
Q  1 cgaacaatagctgattctgctccaacaatttctgcaaaagcctggtcgagagcttcacgccccccagcttcatcatgaccataaccagtgcaaccaccaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38874993 cgaacaatagctgattctgctccaacaatttctgcaaaagcctggtcaagagcttcacgccccccagtttcatcatgaccataaccagtgcaaccaccaa 38874894  T
Q  101 agtgctgacagcattaacaaaataaccaattagggcatgtt-agattgacttatttgagcttatttactagcataaagaccaatgagactaagcctgttt 199  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38874893 agtgctgacagcattaacaaaataaccaattagggcatgtttagattgacttatttgagcttatttactagcataaagaccaatgagactaagcctgttt 38874794  T
Q  200 ggattgttttatttgagcttatctattagcataagcattggtaagactgttccgaagagcttatagaaacaaacatataacacgtccataagctattttt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38874793 ggattgttttatttgagcttatctattagcataagcattggtaagactgttccgaagagcttatagaaacaaacatataacacgtccataagctattttt 38874694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 31884856 - 31884900
Alignment:
Q  192 gcctgtttggattgttttatttgagcttatctattagcataagca 236  Q
    ||||| ||||||||  ||||||||||||||||| |||||||||||    
T  31884856 gcctgcttggattgcgttatttgagcttatctactagcataagca 31884900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 270
Target Start/End: Original strand, 25459548 - 25459624
Alignment:
Q  194 ctgtttggattgttttatttgagcttatctattagcataagcattggtaagactgttccgaagagcttatagaaaca 270  Q
    |||||||||||| |||||||||||||||| | ||||||||||| | || ||| ||||  |||||||||| |||||||    
T  25459548 ctgtttggattgatttatttgagcttatcaactagcataagcacttgtgagattgtttggaagagcttagagaaaca 25459624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 51929895 - 51929854
Alignment:
Q  192 gcctgtttggattgttttatttgagcttatctattagcataa 233  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  51929895 gcctgtttggattgacttatttgagcttatctattagcataa 51929854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 37273272 - 37273209
Alignment:
Q  208 ttatttgagcttatctattagcataagcattggtaagactgttccgaagagcttatagaaacaa 271  Q
    |||||||| ||||| |||||||||||||| |||| ||||||||  | ||||||||| |||||||    
T  37273272 ttatttgaacttatttattagcataagcactggtgagactgtttgggagagcttatggaaacaa 37273209  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 53762310 - 53762351
Alignment:
Q  192 gcctgtttggattgttttatttgagcttatctattagcataa 233  Q
    ||||| |||||||| |||||||||||||||||| ||||||||    
T  53762310 gcctgcttggattggtttatttgagcttatctactagcataa 53762351  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 584191 - 584159
Alignment:
Q  143 gattgacttatttgagcttatttactagcataa 175  Q
    ||||||||||||||||||||| |||||||||||    
T  584191 gattgacttatttgagcttatctactagcataa 584159  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 3775770 - 3775846
Alignment:
Q  195 tgtttggattgttttatttgagcttatctattagcataagcattggtaagactgttccgaagagcttatagaaacaa 271  Q
    |||||||||||  ||||||||| ||||||| | |||||| || | || ||||||||  | |||||||||||||||||    
T  3775770 tgtttggattgccttatttgagtttatctactggcataaacaattgttagactgtttggcagagcttatagaaacaa 3775846  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 284
Target Start/End: Original strand, 4534291 - 4534382
Alignment:
Q  192 gcctgtttggattgttttatttgagcttatctattagcataagcattggtaagactgttccgaagagcttatagaaacaaacatataacacgt 284  Q
    |||||||| ||||| ||||||||||||||||||||  |||||||  | |||| ||| ||  | |||| |||||||||| ||| ||||||||||    
T  4534291 gcctgtttcgattgatttatttgagcttatctattcacataagcccttgtaaaactatttggtagaggttatagaaac-aacttataacacgt 4534382  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 43948815 - 43948751
Alignment:
Q  185 agactaagcctgtttggattgttttatttgagcttatctattagcataagcattggtaagactgt 249  Q
    |||||||||||||||||||||  | ||||||| | |||||||  |||||||||| || |||||||    
T  43948815 agactaagcctgtttggattggctaatttgagttaatctattgtcataagcatttgtgagactgt 43948751  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 48364835 - 48364871
Alignment:
Q  140 ttagattgacttatttgagcttatttactagcataaa 176  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  48364835 ttagattgacttatttgagtttatttactagtataaa 48364871  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 48807847 - 48807811
Alignment:
Q  140 ttagattgacttatttgagcttatttactagcataaa 176  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  48807847 ttagattgagttatttaagcttatttactagcataaa 48807811  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 24363517 - 24363560
Alignment:
Q  193 cctgtttggattgttttatttgagcttatctattagcataagca 236  Q
    |||||||||||||||||||||||| ||||||| |||||||||||    
T  24363517 cctgtttggattgttttatttgagtttatctactagcataagca 24363560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 32410688 - 32410648
Alignment:
Q  198 ttggattgttttatttgagcttatctattagcataagcatt 238  Q
    ||||||||  ||||||||||||||||||| |||||||||||    
T  32410688 ttggattggcttatttgagcttatctattggcataagcatt 32410648  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 262
Target Start/End: Complemental strand, 28615662 - 28615608
Alignment:
Q  208 ttatttgagcttatctattagcataagcattggtaagactgttccgaagagctta 262  Q
    ||||||||||||||||| |  |||||||||| ||||||||||| |||||||||||    
T  28615662 ttatttgagcttatctaatgacataagcatttgtaagactgtttcgaagagctta 28615608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 22796806 - 22796763
Alignment:
Q  195 tgtttggattgttttatttgagcttatctattagcataagcatt 238  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||    
T  22796806 tgtttggattgatttatttgagtttatctactagcataagcatt 22796763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 25487489 - 25487544
Alignment:
Q  208 ttatttgagcttatctattagcataagcattggtaagactgttccgaagagcttat 263  Q
    ||||||||| ||||||||||||||||||| | |||||| ||||  |||||||||||    
T  25487489 ttatttgagtttatctattagcataagcacttgtaagattgtttggaagagcttat 25487544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 10172213 - 10172172
Alignment:
Q  195 tgtttggattgttttatttgagcttatctattagcataagca 236  Q
    ||||||||||| |||||||||||||||||||  |||||||||    
T  10172213 tgtttggattgatttatttgagcttatctatatgcataagca 10172172  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 175
Target Start/End: Original strand, 34430626 - 34430655
Alignment:
Q  146 tgacttatttgagcttatttactagcataa 175  Q
    ||||||||||||||||||||||||||||||    
T  34430626 tgacttatttgagcttatttactagcataa 34430655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 3637299 - 3637335
Alignment:
Q  197 tttggattgttttatttgagcttatctattagcataa 233  Q
    |||||||||  ||||||||||||||||||||||||||    
T  3637299 tttggattgacttatttgagcttatctattagcataa 3637335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 35571549 - 35571589
Alignment:
Q  194 ctgtttggattgttttatttgagcttatctattagcataag 234  Q
    ||||||||||||  ||||||||||||||||| |||||||||    
T  35571549 ctgtttggattggcttatttgagcttatctactagcataag 35571589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 272
Target Start/End: Complemental strand, 44320099 - 44320023
Alignment:
Q  196 gtttggattgttttatttgagcttatctattagcataagcattggtaagactgttccgaagagcttatagaaacaaa 272  Q
    |||||||||| |||||||||||||| ||||| |||||| || | || ||||||||  | |||||||||  |||||||    
T  44320099 gtttggattggtttatttgagcttacctattggcataaacaattgtgagactgtttgggagagcttatgaaaacaaa 44320023  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 15370239 - 15370297
Alignment:
Q  192 gcctgtttggattgttttatttgagcttatctattagcataagcattggtaagactgtt 250  Q
    ||||||||||||||  ||||||||||||||||| | ||||||||||| || ||||||||    
T  15370239 gcctgtttggattgacttatttgagcttatctactggcataagcatttgtgagactgtt 15370297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 32821961 - 32821858
Alignment:
Q  194 ctgtttggattgttttatttgagcttatctattagcataagcattggtaagactgttccgaagagcttatagaaacaaacatataacacgtccataagct 293  Q
    |||||| |||||  |||||||||||||||||  | | |||||||| | |||||||||  |||||| |||||||||| ||| ||| ||| |||||||||||    
T  32821961 ctgtttagattgacttatttgagcttatctaccaacgtaagcatttgcaagactgtttggaagagtttatagaaac-aacttatgacatgtccataagct 32821863  T
Q  294 atttt 298  Q
     ||||    
T  32821862 gtttt 32821858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 239
Target Start/End: Complemental strand, 33503153 - 33503105
Alignment:
Q  191 agcctgtttggattgttttatttgagcttatctattagcataagcattg 239  Q
    |||||||||| ||||  ||||||||||||||||| ||||||||||||||    
T  33503153 agcctgtttgtattggcttatttgagcttatctactagcataagcattg 33503105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 11514047 - 11513992
Alignment:
Q  195 tgtttggattgttttatttgagcttatctattagcataagcattggtaagactgtt 250  Q
    ||||||||||| |||||||||| ||||||| ||||||||||| | || ||||||||    
T  11514047 tgtttggattggtttatttgagattatctactagcataagcacttgtgagactgtt 11513992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 14302961 - 14302918
Alignment:
Q  207 tttatttgagcttatctattagcataagcattggtaagactgtt 250  Q
    ||||||||||||||||||||||||||| |||| || ||||||||    
T  14302961 tttatttgagcttatctattagcataaacatttgtgagactgtt 14302918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 10286012 - 10285970
Alignment:
Q  194 ctgtttggattgttttatttgagcttatctattagcataagca 236  Q
    ||||||||||||| |||||| |||||||||||| |||||||||    
T  10286012 ctgtttggattgtcttatttaagcttatctatttgcataagca 10285970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 172
Target Start/End: Complemental strand, 9395274 - 9395245
Alignment:
Q  143 gattgacttatttgagcttatttactagca 172  Q
    ||||||||||||||||||||||||||||||    
T  9395274 gattgacttatttgagcttatttactagca 9395245  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 40759314 - 40759270
Alignment:
Q  192 gcctgtttggattgttttatttgagcttatctattagcataagca 236  Q
    ||||||||||||||  |||||||||||||||||||  ||||||||    
T  40759314 gcctgtttggattgccttatttgagcttatctattgacataagca 40759270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 42868397 - 42868437
Alignment:
Q  192 gcctgtttggattgttttatttgagcttatctattagcata 232  Q
    ||||||||||||||  ||||||||||||||||||| |||||    
T  42868397 gcctgtttggattgccttatttgagcttatctattggcata 42868437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 8010509 - 8010432
Alignment:
Q  194 ctgtttggattgttttatttgagcttatctattagcataagcattggtaagactgttccgaagagcttatagaaacaa 271  Q
    ||||||||||||  |||| |||||||||||||| |||||| |||| || |||| || | | |||||||||||||||||    
T  8010509 ctgtttggattgacttatgtgagcttatctattggcataaacatttgtgagacagtccaggagagcttatagaaacaa 8010432  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 31461829 - 31461756
Alignment:
Q  189 taagcctgtttggattgttttatttgagcttatctattagcataagcattggtaagactgttccgaagagctta 262  Q
    |||||||||||| || | |||||||||||||||||||| ||||||| | | || |||||||||  |||||||||    
T  31461829 taagcctgtttgcatcggtttatttgagcttatctatttgcataagtacttgtgagactgttcgcaagagctta 31461756  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 234
Target Start/End: Complemental strand, 103585 - 103542
Alignment:
Q  191 agcctgtttggattgttttatttgagcttatctattagcataag 234  Q
    |||||||||||||||  |||||||||||||| ||||||||||||    
T  103585 agcctgtttggattgacttatttgagcttatatattagcataag 103542  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 835179 - 835219
Alignment:
Q  194 ctgtttggattgttttatttgagcttatctattagcataag 234  Q
    ||||||||||||  ||||||||||||||||| |||||||||    
T  835179 ctgtttggattgccttatttgagcttatctactagcataag 835219  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 12111121 - 12111077
Alignment:
Q  192 gcctgtttggattgttttatttgagcttatctattagcataagca 236  Q
    |||| |||||||||  ||||||||||||||||| |||||||||||    
T  12111121 gcctatttggattgacttatttgagcttatctactagcataagca 12111077  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 12111112 - 12111080
Alignment:
Q  143 gattgacttatttgagcttatttactagcataa 175  Q
    ||||||||||||||||||||| |||||||||||    
T  12111112 gattgacttatttgagcttatctactagcataa 12111080  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 31338122 - 31338090
Alignment:
Q  143 gattgacttatttgagcttatttactagcataa 175  Q
    ||||||||||||||||||||| |||||||||||    
T  31338122 gattgacttatttgagcttatctactagcataa 31338090  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 12763475 - 12763419
Alignment:
Q  195 tgtttggattgttttattt-gagcttatctattagcataagcattggtaagactgtt 250  Q
    |||||||||||  |||||| ||| ||||||||||||||||||||| |||||||||||    
T  12763475 tgtttggattggcttattttgagtttatctattagcataagcatttgtaagactgtt 12763419  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 175
Target Start/End: Original strand, 42556528 - 42556563
Alignment:
Q  140 ttagattgacttatttgagcttatttactagcataa 175  Q
    |||||||||||||||||||||||| |||||||||||    
T  42556528 ttagattgacttatttgagcttatatactagcataa 42556563  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 4549462 - 4549536
Alignment:
Q  197 tttggattgttttatttgagcttatctattagcataagcattggtaagactgttccgaagagcttatagaaacaa 271  Q
    |||||||||  ||||||||| ||||||| | |||||||||||  | ||||||||  | |||||||||||||||||    
T  4549462 tttggattggcttatttgagattatctactggcataagcatttctgagactgtttgggagagcttatagaaacaa 4549536  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 37631475 - 37631517
Alignment:
Q  192 gcctgtttggattgttttatttgagcttatctattagcataag 234  Q
    ||||||||||||||  ||||||||||| |||||||||||||||    
T  37631475 gcctgtttggattggcttatttgagctcatctattagcataag 37631517  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 40591051 - 40591088
Alignment:
Q  138 tgttagattgacttatttgagcttatttactagcataa 175  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  40591051 tgttagattgaattatttgagcttatttactggcataa 40591088  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 11696014 - 11695974
Alignment:
Q  194 ctgtttggattgttttatttgagcttatctattagcataag 234  Q
    ||||||||||||  |||||||||||||| ||||||||||||    
T  11696014 ctgtttggattgacttatttgagcttatttattagcataag 11695974  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 11696007 - 11695975
Alignment:
Q  143 gattgacttatttgagcttatttactagcataa 175  Q
    |||||||||||||||||||||||| ||||||||    
T  11696007 gattgacttatttgagcttatttattagcataa 11695975  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 176
Target Start/End: Complemental strand, 24279897 - 24279861
Alignment:
Q  140 ttagattgacttatttgagcttatttactagcataaa 176  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  24279897 ttagattgtcttatttgaacttatttactagcataaa 24279861  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 29723634 - 29723602
Alignment:
Q  143 gattgacttatttgagcttatttactagcataa 175  Q
    |||||||| ||||||||||||||||||||||||    
T  29723634 gattgactaatttgagcttatttactagcataa 29723602  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 190
Target Start/End: Complemental strand, 31723950 - 31723903
Alignment:
Q  143 gattgacttatttgagcttatttactagcataaagaccaatgagacta 190  Q
    ||||||||||||||||||||| |||||||||||| ||  |||||||||    
T  31723950 gattgacttatttgagcttatgtactagcataaacacttatgagacta 31723903  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 36326159 - 36326104
Alignment:
Q  195 tgtttggattgttttatttgagcttatctattagcataagcattggtaagactgtt 250  Q
    |||||||||||| |||||| |||||||||||| ||||||||| |||| ||| ||||    
T  36326159 tgtttggattgtcttattttagcttatctattggcataagcactggtgagattgtt 36326104  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 176
Target Start/End: Complemental strand, 1899295 - 1899265
Alignment:
Q  146 tgacttatttgagcttatttactagcataaa 176  Q
    |||||||||||||||||||||||||||||||    
T  1899295 tgacttatttgagcttatttactagcataaa 1899265  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 9174967 - 9174929
Alignment:
Q  195 tgtttggattgttttatttgagcttatctattagcataa 233  Q
    |||||||||||  ||||||||||||||||||||||||||    
T  9174967 tgtttggattgacttatttgagcttatctattagcataa 9174929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 293
Target Start/End: Complemental strand, 11457236 - 11457152
Alignment:
Q  208 ttatttgagcttatctattagcataagcattggtaagactgttccgaagagcttatagaaacaaacatataacacgtccataagct 293  Q
    ||||||||||||||||||| ||| || || | || ||||||||  ||||||||||| ||||| ||| ||| ||| |||||||||||    
T  11457236 ttatttgagcttatctattggcagaaacacttgtgagactgttttgaagagcttatggaaac-aacttatgacatgtccataagct 11457152  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 16937800 - 16937841
Alignment:
Q  193 cctgtttggattgttttatttgagcttatctattagcataag 234  Q
    |||||||||||||  ||||||||||||||||| |||||||||    
T  16937800 cctgtttggattggcttatttgagcttatctactagcataag 16937841  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 6938649 - 6938693
Alignment:
Q  192 gcctgtttggattgttttatttgagcttatctattagcataagca 236  Q
    |||||||||||||   ||||||||||||||||| |||||||||||    
T  6938649 gcctgtttggattaggttatttgagcttatctactagcataagca 6938693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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