View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8062_low_8 (Length: 306)

Name: NF8062_low_8
Description: NF8062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8062_low_8
NF8062_low_8
[»] chr4 (14 HSPs)
chr4 (19-290)||(7766382-7766653)
chr4 (100-290)||(7787221-7787413)
chr4 (51-164)||(7787538-7787651)
chr4 (201-290)||(7787451-7787540)
chr4 (44-184)||(37826032-37826172)
chr4 (112-172)||(7793670-7793730)
chr4 (70-132)||(7772884-7772946)
chr4 (45-146)||(50669901-50670002)
chr4 (112-168)||(7816831-7816887)
chr4 (22-198)||(7790914-7791091)
chr4 (70-197)||(50249814-50249946)
chr4 (152-198)||(48170239-48170285)
chr4 (113-198)||(48146951-48147035)
chr4 (122-158)||(7787651-7787687)
[»] chr7 (1 HSPs)
chr7 (72-149)||(48884766-48884843)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 7766653 - 7766382
Alignment:
Q  19 cagagaaatggcaagagctaaagtagaaattaaagagcaaaaccttatatatccttcaacatgcataaactcaaaagattaatttaccacatgaaacaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7766653 cagagaaatggcaagagctaaagtagaaattaaagagcaaaaccttatatatccttcaacatgcataaactcaaaagattaatttaccacatgaaacaat 7766554  T
Q  119 ttcaagtagtgacaataacataaatttagaatgcaatccagttacacatgcataaacaacattgaagcatacaaacaaagaaacaaagttgtcaatattt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7766553 ttcaagtagtgacaataacataaatttagaatgcaatccagttacacatgcataaacaacattgaagcatacaaacaaagaaacaaagttgtcaatattt 7766454  T
Q  219 ctgacaagaatatgacaaatactaaactaataaacatttcaaaacatagcagcttagcacatgttacaaatg 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7766453 ctgacaagaatatgacaaatactaaactaataaacatttcaaaacatagcagcttagcacatgttacaaatg 7766382  T

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Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 100 - 290
Target Start/End: Complemental strand, 7787413 - 7787221
Alignment:
Q  100 atttaccacatgaaacaatttc---aagtagtgacaataacataaatttagaatgcaatccagttacacatgcataaacaacattgaagcatacaaacaa 196  Q
    ||||||||||||||| ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||    
T  7787413 atttaccacatgaaataatttcttcaagtagtgacaataacataaatttagaatgcaatccagttacacatgcatacataacatttaagcatacaaacaa 7787314  T
Q  197 agaaacaaagttgtcaatatttctgacaagaatatgacaaatactaaactaataaacatttcaaaacatagcagcttagcacatgttacaaatg 290  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  7787313 agaaacga-gttgtcaatatttctgacaagaatatgacaaatactaaactaataaacatttcaaaacatagcagctcagcacaagttacaaatg 7787221  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 7787651 - 7787538
Alignment:
Q  51 aagagcaaaaccttatatatccttcaacatgcataaactcaaaagattaatttaccacatgaaacaatttcaagtagtgacaataacataaatttagaat 150  Q
    |||||||||||||| |   ||||||||| ||||| ||||||  |||||||||||||| ||||||||||| ||||||||||||| |||||| |||||||||    
T  7787651 aagagcaaaaccttcttcttccttcaacgtgcattaactcatcagattaatttaccatatgaaacaattacaagtagtgacaacaacatacatttagaat 7787552  T
Q  151 gcaatccagttaca 164  Q
    |||||||| |||||    
T  7787551 gcaatccaattaca 7787538  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 290
Target Start/End: Complemental strand, 7787540 - 7787451
Alignment:
Q  201 acaaagttgtcaatatttctgacaagaatatgacaaatactaaactaataaacatttcaaaacatagcagcttagcacatgttacaaatg 290  Q
    ||||||||||||||||||  || ||| |||||||||| | ||||| |||||||||||||  ||||||||||| ||| |||||||||||||    
T  7787540 acaaagttgtcaatattttcgataagcatatgacaaacagtaaacgaataaacatttcatgacatagcagctcagctcatgttacaaatg 7787451  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 184
Target Start/End: Original strand, 37826032 - 37826172
Alignment:
Q  44 gaaattaaagagcaaaaccttatatatccttcaacatgcataaactcaaaagattaatttaccacatgaaacaatttcaagtagtgacaataacataaat 143  Q
    ||||||| ||| ||||||||||| | |||||||| |||||||| ||||  | |||||||||||| || |||| ||||||   |||||||| |||||| |     
T  37826032 gaaattagagaacaaaaccttatttttccttcaatatgcataacctcatcaaattaatttaccatataaaaccatttcagacagtgacaaaaacatacaa 37826131  T
Q  144 ttagaatgcaatccagttacacatgcataaacaacattgaa 184  Q
    ||||||  ||||||| ||||| ||||||||| |||| ||||    
T  37826132 ttagaactcaatccaattacatatgcataaataacaatgaa 37826172  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 7793670 - 7793730
Alignment:
Q  112 aaacaatttcaagtagtgacaataacataaatttagaatgcaatccagttacacatgcata 172  Q
    ||||||||||||| |||||||| |||||  ||||||||| |||||||||||||||||||||    
T  7793670 aaacaatttcaagcagtgacaacaacatgcatttagaattcaatccagttacacatgcata 7793730  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 7772884 - 7772946
Alignment:
Q  70 tccttcaacatgcataaactcaaaagattaatttaccacatgaaacaatttcaagtagtgaca 132  Q
    |||||||||||| |||||||||  |||||||||||||| || ||||||||||||| |||||||    
T  7772884 tccttcaacatgtataaactcatcagattaatttaccatataaaacaatttcaagcagtgaca 7772946  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 50670002 - 50669901
Alignment:
Q  45 aaattaaagagcaaaaccttatatatccttcaacatgcataaactcaaaagattaatttaccacatgaaacaatttcaagtagtgacaataacataaatt 144  Q
    |||||| ||| ||||||||| | | |||||||||||||||||| | |  |||||| ||||||| || ||||||||||||| ||| |||| |||||| |||    
T  50670002 aaattagagaacaaaaccttctttttccttcaacatgcataaattaaccagattagtttaccatataaaacaatttcaagcagtcacaacaacatacatt 50669903  T
Q  145 ta 146  Q
    ||    
T  50669902 ta 50669901  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 7816831 - 7816887
Alignment:
Q  112 aaacaatttcaagtagtgacaataacataaatttagaatgcaatccagttacacatg 168  Q
    ||||||||||||| |||||||| |||||  ||||||||| |||||||||||||||||    
T  7816831 aaacaatttcaagcagtgacaacaacatgcatttagaattcaatccagttacacatg 7816887  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 7791091 - 7790914
Alignment:
Q  22 agaaatggcaagagctaaagtagaaattaaagagcaaaaccttatatatccttcaacatgcataaactcaaaagattaatttaccacatgaaacaatttc 121  Q
    |||||||||||| || ||||| ||||||| ||| |||||  || | | ||||||||| ||| |||||| |   |||||| |||||| || || |||||||    
T  7791091 agaaatggcaagggcaaaagttgaaattagagaacaaaaaattgtttttccttcaacttgcctaaacttatcggattaacttaccatataaatcaatttc 7790992  T
Q  122 aagtagtgacaataacataaatttagaatgc-aatccagttacacatgcataaacaacattgaagcatacaaacaaag 198  Q
    ||| | |||||  | |||| ||||| || || |||||||||||| ||||||||| |||| |||  || ||||||||||    
T  7790991 aagcaatgacatcagcatacatttaaaacgcaaatccagttacagatgcataaataacagtgagtcacacaaacaaag 7790914  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 197
Target Start/End: Original strand, 50249814 - 50249946
Alignment:
Q  70 tccttcaacatgcataaactcaaaagattaatttac-----cacatgaaacaatttcaagtagtgacaataacataaatttagaatgcaatccagttaca 164  Q
    |||||||| |||||||||||||  |||||||||||      || || |||||||||||   |||||||| |||||| ||||||||  | |||||||||||    
T  50249814 tccttcaatatgcataaactcatcagattaatttattttatcatataaaacaatttcagacagtgacaacaacatatatttagaactctatccagttaca 50249913  T
Q  165 catgcataaacaacattgaagcatacaaacaaa 197  Q
     ||||||||| |||| |||| |  |||||||||    
T  50249914 aatgcataaataacagtgaatcgcacaaacaaa 50249946  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 48170239 - 48170285
Alignment:
Q  152 caatccagttacacatgcataaacaacattgaagcatacaaacaaag 198  Q
    ||||||||||||||||||||||| |||| |||| || ||||||||||    
T  48170239 caatccagttacacatgcataaataacagtgaatcacacaaacaaag 48170285  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 48146951 - 48147035
Alignment:
Q  113 aacaatttcaagtagtgacaataacataaatttagaatgcaatccagttacacatgcataaacaacattgaagcatacaaacaaag 198  Q
    |||||||||| | |||||| | |||||| ||| ||||  ||||||||||||||||||||||| |||| |||| ||  |||||||||    
T  48146951 aacaatttcaggcagtgaccacaacatacatt-agaactcaatccagttacacatgcataaataacactgaatcacgcaaacaaag 48147035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 7787687 - 7787651
Alignment:
Q  122 aagtagtgacaataacataaatttagaatgcaatcca 158  Q
    |||||||||||| |||||| |||||||||||||||||    
T  7787687 aagtagtgacaacaacatacatttagaatgcaatcca 7787651  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 48884843 - 48884766
Alignment:
Q  72 cttcaacatgcataaactcaaaagattaatttaccacatgaaacaatttcaagtagtgacaataacataaatttagaa 149  Q
    |||||||||| |||||||||  |||||||||||| |||| ||||||||||||| | |||||  |||| ||||||||||    
T  48884843 cttcaacatgtataaactcatcagattaatttacgacataaaacaatttcaagcaatgacagcaacagaaatttagaa 48884766  T

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