View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8063_high_1 (Length: 600)

Name: NF8063_high_1
Description: NF8063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8063_high_1
NF8063_high_1
[»] chr4 (9 HSPs)
chr4 (19-93)||(24056783-24056857)
chr4 (351-417)||(21867441-21867507)
chr4 (351-417)||(21923302-21923368)
chr4 (59-103)||(22905032-22905076)
chr4 (59-103)||(22956700-22956744)
chr4 (59-103)||(43441788-43441832)
chr4 (59-102)||(44645346-44645389)
chr4 (55-131)||(26728493-26728569)
chr4 (45-117)||(34821674-34821746)
[»] chr1 (1 HSPs)
chr1 (349-401)||(3213944-3213996)
[»] chr8 (2 HSPs)
chr8 (53-111)||(4903479-4903537)
chr8 (57-110)||(3961182-3961235)
[»] scaffold0272 (1 HSPs)
scaffold0272 (351-416)||(2472-2537)
[»] chr7 (1 HSPs)
chr7 (71-111)||(32016682-32016722)


Alignment Details
Target: chr4 (Bit Score: 67; Significance: 2e-29; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 24056857 - 24056783
Alignment:
Q  19 ggatcgctaacggagatgcaagtcaaggtgtttacgcatatttggaagagttcagctccgtccaaagtggtggct 93  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24056857 ggatcgctaacagagatgcgagtcaaggtgtttacgcatatttggaagagttcagctccgtccaaagtggtggct 24056783  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 417
Target Start/End: Complemental strand, 21867507 - 21867441
Alignment:
Q  351 gattcgtaaagggtaccggcttatttggcatgcggcgatttggacaatttggagggtgagaaatgac 417  Q
    ||||||||| |||||| || |||| ||||||||||| ||||||||||||||| | || |||||||||    
T  21867507 gattcgtaaggggtactggattatctggcatgcggctatttggacaatttggcgagttagaaatgac 21867441  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 417
Target Start/End: Complemental strand, 21923368 - 21923302
Alignment:
Q  351 gattcgtaaagggtaccggcttatttggcatgcggcgatttggacaatttggagggtgagaaatgac 417  Q
    ||||||||| |||||| || |||| ||||||||||| ||||||||||||||| | || |||||||||    
T  21923368 gattcgtaaggggtactggattatctggcatgcggctatttggacaatttggcgagttagaaatgac 21923302  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 22905076 - 22905032
Alignment:
Q  59 tttggaagagttcagctccgtccaaagtggtggctttttcttgga 103  Q
    ||||||||||| | |||||||||||||| ||||||||||||||||    
T  22905076 tttggaagagtccggctccgtccaaagtcgtggctttttcttgga 22905032  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 22956744 - 22956700
Alignment:
Q  59 tttggaagagttcagctccgtccaaagtggtggctttttcttgga 103  Q
    ||||||||||| | |||||||||||||| ||||||||||||||||    
T  22956744 tttggaagagtccggctccgtccaaagtcgtggctttttcttgga 22956700  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 43441832 - 43441788
Alignment:
Q  59 tttggaagagttcagctccgtccaaagtggtggctttttcttgga 103  Q
    ||||||||||| | |||||||||||||| ||||||||||||||||    
T  43441832 tttggaagagtccggctccgtccaaagtcgtggctttttcttgga 43441788  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 44645346 - 44645389
Alignment:
Q  59 tttggaagagttcagctccgtccaaagtggtggctttttcttgg 102  Q
    ||||||||||||| ||||| ||||| ||||||||||||||||||    
T  44645346 tttggaagagttcggctccatccaaggtggtggctttttcttgg 44645389  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 26728493 - 26728569
Alignment:
Q  55 catatttggaagagttcagctccgtccaaagtggtggctttttcttggaaacttctttatgattggatcccgacgaa 131  Q
    ||||||||||| ||| | |||||||| |||||||| |  || ||||||||| | ||| |||||||||| ||||||||    
T  26728493 catatttggaaaagtccggctccgtctaaagtggtagaattctcttggaaattgcttcatgattggataccgacgaa 26728569  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 34821746 - 34821674
Alignment:
Q  45 ggtgtttacgcatatttggaagagttcagctccgtccaaagtggtggctttttcttggaaacttctttatgat 117  Q
    ||||||| |||| ||| |||||||||| ||||| || |||||||| |  ||| |||||||||||||| |||||    
T  34821746 ggtgtttgcgcaaattcggaagagttcggctccatctaaagtggtcgtctttgcttggaaacttcttcatgat 34821674  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 3213944 - 3213996
Alignment:
Q  349 aggattcgtaaagggtaccggcttatttggcatgcggcgatttggacaatttg 401  Q
    |||||||  ||||| |||||||||||||| |||||| ||||||||||||||||    
T  3213944 aggattcaaaaaggttaccggcttatttgacatgcgtcgatttggacaatttg 3213996  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 4903479 - 4903537
Alignment:
Q  53 cgcatatttggaagagttcagctccgtccaaagtggtggctttttcttggaaacttctt 111  Q
    ||||||||||||||||  | || ||||| |||||||||| |||| ||||||||||||||    
T  4903479 cgcatatttggaagagcccggcaccgtcgaaagtggtggtttttacttggaaacttctt 4903537  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 3961235 - 3961182
Alignment:
Q  57 tatttggaagagttcagctccgtccaaagtggtggctttttcttggaaacttct 110  Q
    ||||||||| || |||||||| || || || |||||||||||||||||||||||    
T  3961235 tatttggaaaagctcagctccctcaaaggtcgtggctttttcttggaaacttct 3961182  T

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Target: scaffold0272 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 416
Target Start/End: Original strand, 2472 - 2537
Alignment:
Q  351 gattcgtaaagggtaccggcttatttggcatgcggcgatttggacaatttggagggtgagaaatga 416  Q
    |||||||||||| ||| || | |||||||| || ||| ||||||  ||||||||||||||||||||    
T  2472 gattcgtaaaggttactggttgatttggcacgccgcggtttggagtatttggagggtgagaaatga 2537  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 32016682 - 32016722
Alignment:
Q  71 cagctccgtccaaagtggtggctttttcttggaaacttctt 111  Q
    |||| ||||| ||||| ||||||||||||||||||||||||    
T  32016682 cagccccgtcaaaagttgtggctttttcttggaaacttctt 32016722  T

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