View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8063_high_10 (Length: 273)

Name: NF8063_high_10
Description: NF8063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8063_high_10
NF8063_high_10
[»] chr7 (14 HSPs)
chr7 (23-260)||(23983290-23983527)
chr7 (149-246)||(36449287-36449383)
chr7 (191-260)||(28534287-28534355)
chr7 (131-260)||(9427878-9428007)
chr7 (177-260)||(22567888-22567970)
chr7 (31-260)||(24324556-24324787)
chr7 (101-204)||(9107308-9107410)
chr7 (156-251)||(1321012-1321109)
chr7 (157-260)||(40292806-40292909)
chr7 (219-254)||(9107408-9107443)
chr7 (20-63)||(36449164-36449207)
chr7 (224-259)||(48058442-48058477)
chr7 (31-117)||(8745244-8745330)
chr7 (28-236)||(3478440-3478647)
[»] chr1 (21 HSPs)
chr1 (23-254)||(16577344-16577576)
chr1 (160-251)||(38548844-38548934)
chr1 (34-247)||(41126261-41126462)
chr1 (150-246)||(16148987-16149083)
chr1 (160-250)||(38544524-38544613)
chr1 (156-260)||(32882584-32882689)
chr1 (177-260)||(17033810-17033892)
chr1 (31-117)||(16147649-16147735)
chr1 (132-250)||(49820311-49820427)
chr1 (156-260)||(34775089-34775194)
chr1 (177-252)||(42374386-42374460)
chr1 (180-259)||(46603606-46603683)
chr1 (199-260)||(46768437-46768498)
chr1 (31-117)||(6583120-6583206)
chr1 (31-117)||(31290923-31291009)
chr1 (222-260)||(37200386-37200424)
chr1 (149-228)||(10785252-10785330)
chr1 (211-260)||(26602607-26602656)
chr1 (218-254)||(6583016-6583052)
chr1 (156-184)||(24659146-24659174)
chr1 (157-239)||(31290799-31290880)
[»] chr2 (25 HSPs)
chr2 (23-247)||(16952154-16952380)
chr2 (23-247)||(17022819-17023045)
chr2 (23-247)||(17060125-17060351)
chr2 (5-230)||(10173368-10173593)
chr2 (92-213)||(20572226-20572346)
chr2 (177-254)||(13699068-13699144)
chr2 (160-254)||(27879916-27880011)
chr2 (31-117)||(34230292-34230378)
chr2 (190-254)||(25504691-25504754)
chr2 (31-260)||(7696053-7696284)
chr2 (156-260)||(12343037-12343140)
chr2 (186-254)||(4974992-4975061)
chr2 (186-254)||(4992900-4992969)
chr2 (162-253)||(15126192-15126283)
chr2 (178-261)||(22884911-22884991)
chr2 (132-252)||(27740153-27740270)
chr2 (132-244)||(43816249-43816359)
chr2 (224-259)||(15360985-15361020)
chr2 (132-254)||(33788414-33788535)
chr2 (33-103)||(41086715-41086785)
chr2 (222-259)||(24308513-24308550)
chr2 (156-246)||(1269698-1269787)
chr2 (198-254)||(37770413-37770469)
chr2 (161-236)||(41086572-41086648)
chr2 (202-254)||(41113502-41113554)
[»] chr5 (16 HSPs)
chr5 (14-254)||(17853836-17854073)
chr5 (84-260)||(26045722-26045901)
chr5 (190-254)||(8731153-8731216)
chr5 (177-260)||(39183962-39184044)
chr5 (160-254)||(24072050-24072142)
chr5 (149-259)||(14302203-14302314)
chr5 (167-259)||(33109957-33110050)
chr5 (149-233)||(33258665-33258750)
chr5 (199-254)||(7682815-7682870)
chr5 (218-260)||(7195059-7195101)
chr5 (159-251)||(8297694-8297785)
chr5 (224-254)||(22675102-22675132)
chr5 (205-259)||(30097600-30097654)
chr5 (14-62)||(24072226-24072274)
chr5 (212-260)||(26405306-26405354)
chr5 (157-205)||(39024259-39024306)
[»] chr6 (9 HSPs)
chr6 (23-260)||(32935101-32935337)
chr6 (193-260)||(17278260-17278326)
chr6 (31-114)||(20701710-20701793)
chr6 (132-260)||(33968395-33968518)
chr6 (211-260)||(15120361-15120410)
chr6 (156-236)||(20701583-20701664)
chr6 (219-251)||(16180683-16180715)
chr6 (224-259)||(13098347-13098382)
chr6 (97-205)||(21266263-21266369)
[»] chr4 (12 HSPs)
chr4 (101-259)||(12296322-12296480)
chr4 (149-260)||(22810919-22811029)
chr4 (28-231)||(19673188-19673392)
chr4 (31-260)||(41117726-41117957)
chr4 (160-253)||(46487477-46487570)
chr4 (28-260)||(19814977-19815213)
chr4 (149-260)||(49747739-49747850)
chr4 (164-243)||(20632261-20632339)
chr4 (149-254)||(48098546-48098649)
chr4 (156-260)||(38636992-38637095)
chr4 (218-260)||(43373865-43373907)
chr4 (31-117)||(49528163-49528249)
[»] scaffold1613 (1 HSPs)
scaffold1613 (160-250)||(803-892)
[»] chr3 (17 HSPs)
chr3 (5-260)||(823195-823450)
chr3 (132-260)||(27399140-27399267)
chr3 (158-259)||(37123601-37123703)
chr3 (186-254)||(12086489-12086558)
chr3 (160-260)||(25594307-25594406)
chr3 (192-248)||(32010016-32010072)
chr3 (156-254)||(14194152-14194247)
chr3 (98-260)||(13018085-13018246)
chr3 (31-174)||(39021122-39021267)
chr3 (149-208)||(14879648-14879708)
chr3 (217-260)||(1652649-1652692)
chr3 (31-117)||(25647777-25647863)
chr3 (136-181)||(23328188-23328233)
chr3 (177-254)||(40689521-40689597)
chr3 (160-244)||(46358181-46358266)
chr3 (158-233)||(28937498-28937574)
chr3 (157-236)||(33143733-33143813)
[»] chr8 (8 HSPs)
chr8 (156-260)||(10248325-10248430)
chr8 (115-254)||(17720489-17720626)
chr8 (150-260)||(17656494-17656606)
chr8 (149-251)||(12197842-12197945)
chr8 (149-251)||(12442270-12442373)
chr8 (225-260)||(25184918-25184953)
chr8 (31-117)||(17656906-17656992)
chr8 (218-260)||(30235890-30235932)
[»] scaffold0063 (1 HSPs)
scaffold0063 (31-248)||(58218-58439)
[»] scaffold0050 (1 HSPs)
scaffold0050 (149-254)||(36920-37023)
[»] scaffold0499 (1 HSPs)
scaffold0499 (224-259)||(6828-6863)
[»] scaffold0119 (1 HSPs)
scaffold0119 (156-246)||(41915-42004)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 23 - 260
Target Start/End: Original strand, 23983290 - 23983527
Alignment:
Q  23 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 122  Q
    |||||||||||||||||||||||||||||||||||||||||| ||  ||||||| ||||||||||||| ||||||||| ||||||| ||||| |||||||    
T  23983290 tttttgtgttctttcggtgtatcggaggttgagaggtggtgacagttgaatgatctttcgaatatgagcttttcggatctggttcagctttgatgatgag 23983389  T
Q  123 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtct 222  Q
    || ||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| |||| ||||||| |||||    
T  23983390 gaccgagaatttcatttagagcggtcttcttttggggtgagtagtgatgatgggtagttatgtatatcgtttttcagtggttgttttcgtgaatgagtct 23983489  T
Q  223 gttttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  23983490 gttttaggtggtggtgtttattttggtgggtgttgtcc 23983527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 149 - 246
Target Start/End: Original strand, 36449287 - 36449383
Alignment:
Q  149 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttatttt 246  Q
    |||||| | ||||||||||||||||| ||||||||| |||||||||||||| ||| |||| ||||||  ||||| |||||||||||||||||||||||    
T  36449287 ttcttttgtggtgagtagtgacgatgagtggttatggatatcgtttttcagcggttgttt-cgtgaagtagtctattttaggtggtgatgtttatttt 36449383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 28534355 - 28534287
Alignment:
Q  191 gtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||| |||||    
T  28534355 gtttttcagtggtcgttt-cgtgaaagagtctgttttaggtggtgatgtttattttggtgggtgttgtcc 28534287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 260
Target Start/End: Complemental strand, 9428007 - 9427878
Alignment:
Q  131 atttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttagg 230  Q
    ||||||||||||| | |  | ||| ||| ||||||||||||| ||||||||||| ||||| ||||| |||||| || | ||||||  | | |||||||||    
T  9428007 atttcatttagagggatgctatttagggatgagtagtgacgacgggtggttatggatatcattttttagtggttgtcttcgtgaaagaatttgttttagg 9427908  T
Q  231 tggtgatgtttattttggtgggtgatgtcc 260  Q
    | ||||||||||||||||| |||| |||||    
T  9427907 tagtgatgtttattttggtaggtgttgtcc 9427878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 22567970 - 22567888
Alignment:
Q  177 tggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
    |||||||| ||| |||||||||||||| |||| ||||||  |||||||||||||||||||||| ||||||||||| || |||||    
T  22567970 tggttatggataccgtttttcagtggttgttt-cgtgaaagagtctgttttaggtggtgatgtgtattttggtggatgttgtcc 22567888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 260
Target Start/End: Complemental strand, 24324787 - 24324556
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcgaga 130  Q
    |||||| |||| ||||||||| ||| |||||||  ||| ||||||| |||||  || ||| ||||||| ||||| ||| |||||||| | ||||  ||||    
T  24324787 ttctttaggtggatcggaggtcgaggggtggtggaagctgaatgatctttcggttaggagcttttcggctgtggctcagctttggtgttcaggacggaga 24324688  T
Q  131 atttcatttagagcggtctt---ctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgttta-cgtgaataagtctgtt 225  Q
     ||| |||| ||| ||| ||   |||| |||||||||||||||||||| |||||  | |||||||| || || |||||||||  ||||||  ||||||||    
T  24324687 gttttattttgaggggtgtttttctttaggggtgagtagtgacgatgg-tggtt--ggatatcgttcttacaatggtcgtttttcgtgaaggagtctgtt 24324591  T
Q  226 ttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
    ||| ||||||| || |||||||||| ||| |||||    
T  24324590 ttaagtggtgacgtgtattttggtgagtgttgtcc 24324556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 9107308 - 9107410
Alignment:
Q  101 gtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagt 200  Q
    |||| |||||||||||||||||||| | |  |||||||||||| ||  || ||| ||| ||||||||| ||||||||||||||| |||||||||| || |    
T  9107308 gtggctcaactttggtgatgaggatgg-gtgtttcatttagaggggagttattttgggatgagtagtggcgatgggtggttatggatatcgttttccaat 9107406  T
Q  201 ggtc 204  Q
    ||||    
T  9107407 ggtc 9107410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 1321012 - 1321109
Alignment:
Q  156 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtg-aataagtctgttttaggtggtgatgtttattttggtgg 251  Q
    ||||||||||||||||||| |||||  |  ||||||||||| ||||||| | || |||| ||   ||||||||||||||||||||| |||||||||||    
T  1321012 ggggtgagtagtgacgatgagtggtattagatatcgtttttacagtggttgctttcgtgaaaggggtctgttttaggtggtgatgtgtattttggtgg 1321109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 260
Target Start/End: Complemental strand, 40292909 - 40292806
Alignment:
Q  157 gggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtga 255  Q
    |||||||||| | ||||| ||||||||| ||||||||||| || |||| ||||  ||||  |||||||||||||| | ||| ||| ||||||||| ||||    
T  40292909 gggtgagtagaggcgatgagtggttatggatatcgttttttcaatggttgtttt-gtgatgaagtctgttttaggcgatgaagttaattttggtgtgtga 40292811  T
Q  256 tgtcc 260  Q
    |||||    
T  40292810 tgtcc 40292806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 254
Target Start/End: Original strand, 9107408 - 9107443
Alignment:
Q  219 gtctgttttaggtggtgatgtttattttggtgggtg 254  Q
    |||||||||||||||||||| |||||||||||||||    
T  9107408 gtctgttttaggtggtgatgcttattttggtgggtg 9107443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 36449164 - 36449207
Alignment:
Q  20 ttatttttgtgttctttcggtgtatcggaggttgagaggtggtg 63  Q
    ||||||| || ||||||||||| |||||||||||||||||||||    
T  36449164 ttattttggttttctttcggtggatcggaggttgagaggtggtg 36449207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 259
Target Start/End: Complemental strand, 48058477 - 48058442
Alignment:
Q  224 ttttaggtggtgatgtttattttggtgggtgatgtc 259  Q
    ||||||||||||||||||||||||||||||| ||||    
T  48058477 ttttaggtggtgatgtttattttggtgggtgttgtc 48058442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 8745244 - 8745330
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 117  Q
    ||||||||||| ||||||||| ||||||| |||  ||| | ||||| ||||  ||| ||| ||||||||||||| ||| ||||||||    
T  8745244 ttctttcggtggatcggaggtcgagaggttgtggaagctgcatgatctttcagataggagcttttcggatgtggctcagctttggtg 8745330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 236
Target Start/End: Original strand, 3478440 - 3478647
Alignment:
Q  28 gtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcg 127  Q
    |||||||||||||| ||||||| | ||||||||| |  ||| ||||||| ||||| || |||  ||||| ||  ||| | | |||||||| ||||||  |    
T  3478440 gtgttctttcggtggatcggagatcgagaggtggcggaagctgaatgatctttcggatgtgaacttttctgagttggctaagctttggtgttgaggactg 3478539  T
Q  128 agaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcg-tttttcagtggtcgtttacgtgaataagtctgttt 226  Q
     || ||| |||| |||  || |||||| ||||||||||||||||| || |||| ||| |||||| |||| |||| ||||| | |||||| | ||||||||    
T  3478540 ggagtttaattttgaggagtgttcttt-ggggtgagtagtgacgacggttggtgatggatatcgcttttacagt-gtcgtattcgtgaagacgtctgttt 3478637  T
Q  227 taggtggtga 236  Q
     || ||||||    
T  3478638 gagttggtga 3478647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 254
Target Start/End: Original strand, 16577344 - 16577576
Alignment:
Q  23 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 122  Q
    |||||| |||||||||||  || ||||||||||||||||||  ||| ||||||| ||| ||||| ||| ||||||||||||| |||||||||||||||      
T  16577344 tttttgcgttctttcggtagattggaggttgagaggtggtggaagctgaatgatctttggaataggagcttttcggatgtggctcaactttggtgatggt 16577443  T
Q  123 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatc-gtttttcagtggtcgtttacgtgaataagtc 221  Q
    ||  || | |||| ||||||| ||| |||||| || |||||||| |||||||  |||||||| |||||  ||||| ||||||||||| ||||||  ||||    
T  16577444 gactgaaagtttcttttagaggggtgttcttttggagtgagtagggacgatgaatggttatggatatcattttttgagtggtcgttttcgtgaaagagtc 16577543  T
Q  222 tgttttaggtggtgatgtttattttggtgggtg 254  Q
    ||||||||||| |||||||||||||||||||||    
T  16577544 tgttttaggtgatgatgtttattttggtgggtg 16577576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 38548934 - 38548844
Alignment:
Q  160 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgg 251  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||  ||||||||||||||||||||||||||||||||||    
T  38548934 tgagtagtgacgatgggtggttatgaatatcgtttttcagtgatcgttt-cgtgaaagagtctgttttaggtggtgatgtttattttggtgg 38548844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 34 - 247
Target Start/End: Complemental strand, 41126462 - 41126261
Alignment:
Q  34 tttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcgagaatt 133  Q
    |||||||| || ||||||||||||||| ||  ||| ||| ||| ||| | ||| ||| ||||| ||||||| |||||||||||||||||||  |||| ||    
T  41126462 tttcggtggattggaggttgagaggtgctggaagctgaacgatcttttggataggagcttttcagatgtggatcaactttggtgatgaggactgagagtt 41126363  T
Q  134 tcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtgg-tcgtttacgtgaataagtctgttttaggtg 232  Q
    ||||||||||             |||||||||||||||||||||||| ||| |||||||||| |||||| | |||| |||||||  ||||||||||||||    
T  41126362 tcatttagag-------------gggtgagtagtgacgatgggtggtgatggatatcgttttacagtggtttgttttcgtgaatgcgtctgttttaggtg 41126276  T
Q  233 gtgatgtttattttg 247  Q
    ||||| | |||||||    
T  41126275 gtgatatgtattttg 41126261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 150 - 246
Target Start/End: Original strand, 16148987 - 16149083
Alignment:
Q  150 tctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttatttt 246  Q
    ||||| ||||||||||||||||||||||| || || ||||||||||||||| ||||||||| ||||   |||||||||||||||||| || ||||||    
T  16148987 tctttgggggtgagtagtgacgatgggtgcttttggatatcgtttttcagtagtcgtttacatgaaggtgtctgttttaggtggtgacgtgtatttt 16149083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 250
Target Start/End: Complemental strand, 38544613 - 38544524
Alignment:
Q  160 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtg 250  Q
    ||||||||||||||| ||||||||| |||||||||| ||||| || ||  ||||||  |||||||||||||||||||||||||||||||||    
T  38544613 tgagtagtgacgatgagtggttatggatatcgttttccagtgatcattc-cgtgaaagagtctgttttaggtggtgatgtttattttggtg 38544524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 156 - 260
Target Start/End: Original strand, 32882584 - 32882689
Alignment:
Q  156 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtg 254  Q
    |||||||||||||||||||||||||  || ||||||| ||| ||||| |||||| ||||||  |||| |||||||| |||||||| ||||||||||||||    
T  32882584 ggggtgagtagtgacgatgggtggtgttggatatcgtgtttacagtgctcgttttcgtgaaggagtcagttttaggcggtgatgtatattttggtgggtg 32882683  T
Q  255 atgtcc 260  Q
     |||||    
T  32882684 ttgtcc 32882689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 17033810 - 17033892
Alignment:
Q  177 tggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
    |||||||||||| ||||||| ||||||||||| ||||||  ||| ||||||||||||| ||||||||||| |||| || |||||    
T  17033810 tggttatgtataccgtttttaagtggtcgttt-cgtgaaagagtatgttttaggtggtaatgtttattttcgtggatgttgtcc 17033892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 16147649 - 16147735
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 117  Q
    ||||||||||  ||||||||| |||||||||||| ||  ||||||| ||||  ||||||| ||||||||||||| ||| ||||||||    
T  16147649 ttctttcggtagatcggaggtggagaggtggtgaaagttgaatgatctttcagatatgagcttttcggatgtggctcagctttggtg 16147735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 250
Target Start/End: Original strand, 49820311 - 49820427
Alignment:
Q  132 tttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggt 231  Q
    |||||||||||| |||  | ||| ||| || || ||| ||| ||||||||||| |||||||||||||||| |||||| | | ||  ||||| ||||||||    
T  49820311 tttcatttagaggggtgatattttgggatgtgtggtggcgacgggtggttatggatatcgtttttcagtgctcgttt-cat-aaggagtcttttttaggt 49820408  T
Q  232 ggtgatgtttattttggtg 250  Q
    |||||||||||||||||||    
T  49820409 ggtgatgtttattttggtg 49820427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 260
Target Start/End: Original strand, 34775089 - 34775194
Alignment:
Q  156 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtg 254  Q
    ||||||||||||||||| |||| ||   | || |||||||| |||| ||||||| ||||||  ||||||||||||||| ||| || ||||||||||||||    
T  34775089 ggggtgagtagtgacgacgggtagtgtgggatttcgtttttacagttgtcgttttcgtgaaggagtctgttttaggtgatgacgtgtattttggtgggtg 34775188  T
Q  255 atgtcc 260  Q
     |||||    
T  34775189 ttgtcc 34775194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 42374386 - 42374460
Alignment:
Q  177 tggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtggg 252  Q
    |||||||| |||  |||||||||||||||||| ||||||  | | |||||||||||||||||||||| ||||||||    
T  42374386 tggttatggatacagtttttcagtggtcgttt-cgtgaaggaatttgttttaggtggtgatgtttatcttggtggg 42374460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 46603606 - 46603683
Alignment:
Q  180 ttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtgatgtc 259  Q
    ||||| ||| ||| || |||||||||||| |||||| ||||||||||||| ||||||| |||||||||||||||| ||||    
T  46603606 ttatggataacgtgttccagtggtcgttt-cgtgaagaagtctgttttagatggtgat-tttattttggtgggtgttgtc 46603683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 46768437 - 46768498
Alignment:
Q  199 gtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
    |||||||||| ||||||  ||||||||||||||||||| ||  ||||||||||||| |||||    
T  46768437 gtggtcgttttcgtgaaggagtctgttttaggtggtgacgtgaattttggtgggtgttgtcc 46768498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 6583206 - 6583120
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 117  Q
    ||||||||||| ||||||||| |||||||||||  ||| || |||| ||||  ||| ||| |||||||||| || ||| ||||||||    
T  6583206 ttctttcggtgaatcggaggtcgagaggtggtggaagctgattgatctttcagataggagcttttcggatgcggctcagctttggtg 6583120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 31291009 - 31290923
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 117  Q
    ||||||||||| ||||||||| |||||||||||  ||  |  |||| ||||| ||| ||| ||||||||||||| ||| ||||||||    
T  31291009 ttctttcggtggatcggaggtcgagaggtggtggaagttgcttgatctttcggataggagcttttcggatgtggctcagctttggtg 31290923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 37200386 - 37200424
Alignment:
Q  222 tgttttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  37200386 tgttttaggtggtgatgtttattttagtgggtgttgtcc 37200424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 10785330 - 10785252
Alignment:
Q  149 ttctttcggggtgagtagtgacgatgggtggttatgtatatcg-tttttcagtggtcgtttacgtgaataagtctgtttta 228  Q
    ||||| |||| |||||||||||||||||||||  || |||||| ||||||||  ||||||| ||||||  |||||||||||    
T  10785330 ttcttgcgggatgagtagtgacgatgggtggt--tggatatcgttttttcagatgtcgttttcgtgaaggagtctgtttta 10785252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 26602656 - 26602607
Alignment:
Q  211 gtgaataagtctgttttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
    |||||| ||||||| |||||||||||||||||||||  |||||| |||||    
T  26602656 gtgaatgagtctgtgttaggtggtgatgtttattttcatgggtgttgtcc 26602607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 6583052 - 6583016
Alignment:
Q  218 agtctgttttaggtggtgatgtttattttggtgggtg 254  Q
    ||||||||||||||||||| || ||||||||||||||    
T  6583052 agtctgttttaggtggtgacgtgtattttggtgggtg 6583016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 184
Target Start/End: Original strand, 24659146 - 24659174
Alignment:
Q  156 ggggtgagtagtgacgatgggtggttatg 184  Q
    |||||||||||||||||||||||||||||    
T  24659146 ggggtgagtagtgacgatgggtggttatg 24659174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 31290880 - 31290799
Alignment:
Q  157 gggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgt 239  Q
    ||||||||||||||||||| |||||  |  |||| ||||| |||||||||||| || |||  |||||| |||||||||||||||    
T  31290880 gggtgagtagtgacgatggatggtt--ggctatcatttttacagtggtcgttttcgcgaaggagtctgatttaggtggtgatgt 31290799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 23 - 247
Target Start/End: Complemental strand, 16952380 - 16952154
Alignment:
Q  23 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 122  Q
    |||| |||||||||||||| |||||||||||||||||||||  |||  || ||| ||||| ||| ||| ||||||||||||| |||||||||||| ||||    
T  16952380 ttttggtgttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgag 16952281  T
Q  123 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagt-ggtcgtttacgtgaataagt 220  Q
    ||  | || |||||||||||| ||| |||||| ||||||||||||||||||| ||||| ||| ||||| ||||| |||| | | |||| ||||||   ||    
T  16952280 gactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgt 16952181  T
Q  221 ctgttttaggtggtgatgtttattttg 247  Q
    |||||||| ||||||||||||||||||    
T  16952180 ctgttttaagtggtgatgtttattttg 16952154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 23 - 247
Target Start/End: Complemental strand, 17023045 - 17022819
Alignment:
Q  23 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 122  Q
    |||| |||||||||||||| |||||||||||||||||||||  |||  || ||| ||||| ||| ||| ||||||||||||| |||||||||||| ||||    
T  17023045 ttttggtgttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgag 17022946  T
Q  123 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagt-ggtcgtttacgtgaataagt 220  Q
    ||  | || |||||||||||| ||| |||||| ||||||||||||||||||| ||||| ||| ||||| ||||| |||| | | |||| ||||||   ||    
T  17022945 gactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgt 17022846  T
Q  221 ctgttttaggtggtgatgtttattttg 247  Q
    |||||||| ||||||||||||||||||    
T  17022845 ctgttttaagtggtgatgtttattttg 17022819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 23 - 247
Target Start/End: Complemental strand, 17060351 - 17060125
Alignment:
Q  23 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 122  Q
    |||| |||||||||||||| |||||||||||||||||||||  |||  || ||| ||||| ||| ||| ||||||||||||| |||||||||||| ||||    
T  17060351 ttttggtgttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgttgag 17060252  T
Q  123 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagt-ggtcgtttacgtgaataagt 220  Q
    ||  | || |||||||||||| ||| |||||| ||||||||||||||||||| ||||| ||| ||||| ||||| |||| | | |||| ||||||   ||    
T  17060251 gactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgt 17060152  T
Q  221 ctgttttaggtggtgatgtttattttg 247  Q
    |||||||| ||||||||||||||||||    
T  17060151 ctgttttaagtggtgatgtttattttg 17060125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 230
Target Start/End: Complemental strand, 10173593 - 10173368
Alignment:
Q  5 agtttggtgttggggttatttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtgg 104  Q
    |||||||| ||||| || | || |||||||||||||| ||||||||| |||||||||||  ||  ||||||| ||| ||||||||| |||||||||||||    
T  10173593 agtttggttttgggcttttgttggtgttctttcggtgaatcggaggtcgagaggtggtggaagttgaatgatcttttgaatatgagcttttcggatgtgg 10173494  T
Q  105 ttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggt 203  Q
     ||| |||||||| ||||||  |||| ||| |||| |||  || |||||| ||||||||||||||||||| |||||  |||||||||||||| |||| ||    
T  10173493 ctcagctttggtgttgaggactgagagtttaattttgaggagtattcttt-ggggtgagtagtgacgatgagtggtgttgtatatcgtttttacagtagt 10173395  T
Q  204 cgtttacgtgaataagtctgttttagg 230  Q
    ||||| | |||| | ||||||||||||    
T  10173394 cgttttcatgaagacgtctgttttagg 10173368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 20572226 - 20572346
Alignment:
Q  92 ttttcggatgtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcg 191  Q
    ||||||||| ||||| | |||| ||||||||||  |||| |||||||||||| ||| |||||| | ||||||||||| |||| |||||||||| ||||||    
T  20572226 ttttcggatatggtttagctttagtgatgaggaatgagagtttcatttagaggggtgttcttttgaggtgagtagtggcgat-ggtggttatggatatcg 20572324  T
Q  192 tttttcagtggtcgtttacgtg 213  Q
    ||||||||||||||||| ||||    
T  20572325 tttttcagtggtcgttttcgtg 20572346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 254
Target Start/End: Complemental strand, 13699144 - 13699068
Alignment:
Q  177 tggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtg 254  Q
    |||||||||||| ||||||||||||||||||| ||| ||  ||| |||||||||||||||||||||||||||||||||    
T  13699144 tggttatgtataccgtttttcagtggtcgttt-cgtaaaagagtgtgttttaggtggtgatgtttattttggtgggtg 13699068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 254
Target Start/End: Complemental strand, 27880011 - 27879916
Alignment:
Q  160 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgttta-ttttggtgggtg 254  Q
    |||||||||  |||| ||||||||| || ||||||||||| |||||||| | ||||  ||||||||||||||||||||||||| ||||||||||||    
T  27880011 tgagtagtggtgatgagtggttatggatttcgtttttcagaggtcgttttcctgaaggagtctgttttaggtggtgatgtttatttttggtgggtg 27879916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 34230292 - 34230378
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 117  Q
    ||||||||||| |||||||||||||||||||||  ||| ||||||| |||| |||| ||| ||||| ||||||| ||||||||||||    
T  34230292 ttctttcggtggatcggaggttgagaggtggtggaagctgaatgatctttcaaataagagcttttcagatgtggctcaactttggtg 34230378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 25504754 - 25504691
Alignment:
Q  190 cgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtg 254  Q
    ||||||||||||||||||| ||||||  | |||||||||||||||||||||||||||||||||||    
T  25504754 cgtttttcagtggtcgttt-cgtgaaagactctgttttaggtggtgatgtttattttggtgggtg 25504691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 260
Target Start/End: Original strand, 7696053 - 7696284
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcgaga 130  Q
    ||||||||||| |||| |||| | |||||||||  ||| ||||||| ||||| ||| ||| |||  |||||||| |||||||||||| | |||| |  ||    
T  7696053 ttctttcggtggatcgaaggtcgggaggtggtggaagctgaatgatctttcggataggagatttgaggatgtggctcaactttggtgttcaggaccagga 7696152  T
Q  131 atttcatttagagcggtcttctttc----ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgtt 225  Q
     ||| ||||  || ||| || ||||    || |||||||||||||||| ||||||  | ||||| ||||| || ||||||||| ||||||  ||| | ||    
T  7696153 gttttatttttaggggtgtt-tttctaagggagtgagtagtgacgatgagtggtt--gaatatcatttttacattggtcgttttcgtgaaggagtttatt 7696249  T
Q  226 ttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
    |||||||||||||| |||||||||||||| |||||    
T  7696250 ttaggtggtgatgtgtattttggtgggtgttgtcc 7696284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 260
Target Start/End: Original strand, 12343037 - 12343140
Alignment:
Q  156 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtg 254  Q
    ||||||||||||||||||| ||||||  | ||||||||||| ||| |||||||| ||||||  ||||||||||||||||||| || ||||||| ||| ||    
T  12343037 ggggtgagtagtgacgatgagtggtt--ggatatcgtttttacagaggtcgttttcgtgaaggagtctgttttaggtggtgacgtgtattttgatggatg 12343134  T
Q  255 atgtcc 260  Q
     |||||    
T  12343135 ttgtcc 12343140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 4974992 - 4975061
Alignment:
Q  186 atatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtg 254  Q
    ||||||||||| |||||||||||| |||||| ||||||||||||||||||| ||| || |||||||||||    
T  4974992 atatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtggtgtgtaatttggtgggtg 4975061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 4992900 - 4992969
Alignment:
Q  186 atatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtg 254  Q
    ||||||||||| |||||||||||| |||||| ||||||||||||||||||| ||| || |||||||||||    
T  4992900 atatcgtttttacagtggtcgttttcgtgaagaagtctgttttaggtggtggtgtgtaatttggtgggtg 4992969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 253
Target Start/End: Complemental strand, 15126283 - 15126192
Alignment:
Q  162 agtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgtttt-aggtggtgatgtttattttggtgggt 253  Q
    ||||||| ||||||||||||||| || | |||||| || ||| |||| ||||||  ||| |||||| ||||||||||||||||||||||||||    
T  15126283 agtagtggcgatgggtggttatggattttgttttttaggggtggttt-cgtgaacgagtttgtttttaggtggtgatgtttattttggtgggt 15126192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 261
Target Start/End: Complemental strand, 22884991 - 22884911
Alignment:
Q  178 ggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtgatgtcca 261  Q
    ||||||| || |||||| ||||||||||||| ||||||  |||||||||||||||||||||||  |||| ||||||| ||||||    
T  22884991 ggttatggatttcgtttgtcagtggtcgttt-cgtgaaggagtctgttttaggtggtgatgtt--ttttagtgggtgttgtcca 22884911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 252
Target Start/End: Original strand, 27740153 - 27740270
Alignment:
Q  132 tttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggt 231  Q
    |||||||||||| ||| || ||  ||| ||||||||| ||| | ||||||||| |||||||| ||||||||| |||| ||||||  ||| ||| ||||||    
T  27740153 tttcatttagaggggtgttattctgggatgagtagtggcgacgagtggttatgaatatcgttcttcagtggtagttt-cgtgaaggagtttgtattaggt 27740251  T
Q  232 ggtgatgtttattttggtggg 252  Q
    ||||  |||||||||| ||||    
T  27740252 ggtg--gtttattttgatggg 27740270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 43816359 - 43816249
Alignment:
Q  132 tttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggt 231  Q
    ||||||||||||  || || |||||||  |||||||| |||||  ||  |||| ||| |||||||||||||| |||| ||||||  ||||| ||||||||    
T  43816359 tttcatttagaggagtgttttttcgggaggagtagtggcgatgc-tgtgtatggataccgtttttcagtggttgttt-cgtgaaagagtctattttaggt 43816262  T
Q  232 ggtgatgtttatt 244  Q
    |||||||||||||    
T  43816261 ggtgatgtttatt 43816249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 259
Target Start/End: Original strand, 15360985 - 15361020
Alignment:
Q  224 ttttaggtggtgatgtttattttggtgggtgatgtc 259  Q
    ||||||||||||||||||||||||||||||| ||||    
T  15360985 ttttaggtggtgatgtttattttggtgggtgttgtc 15361020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 33788535 - 33788414
Alignment:
Q  132 tttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggt 231  Q
    |||||||||||| ||| || ||| |||  |||||||| |||  |||||||||| || | |||| |||||||| |||| |||| |  || |||||||||||    
T  33788535 tttcatttagaggggtgttattttgggacgagtagtggcgacaggtggttatggattttgtttgtcagtggttgttt-cgtggaggagcctgttttaggt 33788437  T
Q  232 ggtgatgtttattttggtgggtg 254  Q
    ||  ||||||||||| |||||||    
T  33788436 ggcaatgtttattttagtgggtg 33788414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 41086785 - 41086715
Alignment:
Q  33 ctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtg 103  Q
    ||||||||| ||||||||| |||||||||||  ||| ||||||| ||||| ||| ||| |||| |||||||    
T  41086785 ctttcggtggatcggaggtcgagaggtggtggaagctgaatgatctttcggataagagctttttggatgtg 41086715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 259
Target Start/End: Complemental strand, 24308550 - 24308513
Alignment:
Q  222 tgttttaggtggtgatgtttattttggtgggtgatgtc 259  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  24308550 tgttttaggtgatgatgtttattttggtgggtgttgtc 24308513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 1269698 - 1269787
Alignment:
Q  156 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttatttt 246  Q
    |||| ||||||||||||||||||||  || |||||||||||  || |||||||| || |||  | | |||||||||||||||||| ||||||    
T  1269698 ggggcgagtagtgacgatgggtggt--tggatatcgtttttatagaggtcgtttccgagaaggaatttgttttaggtggtgatgtgtatttt 1269787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 37770469 - 37770413
Alignment:
Q  198 agtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtg 254  Q
    |||||| |||| ||||||  ||||||||||||||||||| ||  |||||||||||||    
T  37770469 agtggtggttttcgtgaaggagtctgttttaggtggtgacgtggattttggtgggtg 37770413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 41086648 - 41086572
Alignment:
Q  161 gagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    ||||||||||||||||||||  || |||||||||||  |||||||| || ||| ||   ||||||||||||||||||    
T  41086648 gagtagtgacgatgggtggtattggatatcgtttttagagtggtcgctttcgttaaggggtctgttttaggtggtga 41086572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 41113554 - 41113502
Alignment:
Q  202 gtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtg 254  Q
    ||||||| ||||||  |||||||||||||| || | |||||||||||||||||    
T  41113554 gtcgttttcgtgaaggagtctgttttaggtagtaacgtttattttggtgggtg 41113502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 17854073 - 17853836
Alignment:
Q  14 ttggggttatttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaacttt 113  Q
    ||||| |||||||  ||||||||||||| | | || ||||||||||||||  ||  ||||||| ||| ||||||||  ||||||||||||| ||| || |    
T  17854073 ttgggcttattttaatgttctttcggtggacctgaagttgagaggtggtggaagttgaatgatctttagaatatgac-ttttcggatgtggctcagctat 17853975  T
Q  114 ggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtg 213  Q
    |||||||||||| | |  ||||||||||||  |||| |||| |||||||||||||  |||||||||||||| |||||||||||||||| |||||| |||     
T  17853974 ggtgatgaggattg-gtgtttcatttagaggtgtctacttttggggtgagtagtggtgatgggtggttatggatatcgtttttcagtgatcgttt-cgta 17853877  T
Q  214 aataagtctgttttaggtggtgatgtttattttggtgggtg 254  Q
    ||  ||||||||||||  |||||||||||||||||||||||    
T  17853876 aaggagtctgttttagaaggtgatgtttattttggtgggtg 17853836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 84 - 260
Target Start/End: Complemental strand, 26045901 - 26045722
Alignment:
Q  84 atatgaggttttcggatgtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctt--tcggggtgagtagtgacgatgggtggtt 181  Q
    ||||||| |||||||| |||  |||||||||||| | ||||| |||| ||| |||| ||| ||| || ||  | ||||||||||||||||||||| |||     
T  26045901 atatgagcttttcggaggtgactcaactttggtgtttaggattgagagtttaattttgaggggtgtttttctttggggtgagtagtgacgatgggaggtg 26045802  T
Q  182 atgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
     || || |||||||| | |||||| ||| | |||| |||||||||||||||||||| ||  ||||||||||||| |||||    
T  26045801 ttggatttcgtttttaccgtggtcattttcatgaagaagtctgttttaggtggtgacgtgaattttggtgggtgttgtcc 26045722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 8731153 - 8731216
Alignment:
Q  190 cgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtg 254  Q
    ||||||||||||||||||| ||||||  | |||||||||||||||||||||||||||||||||||    
T  8731153 cgtttttcagtggtcgttt-cgtgaaagactctgttttaggtggtgatgtttattttggtgggtg 8731216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 39184044 - 39183962
Alignment:
Q  177 tggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
    |||||||| ||| ||||||||||||||||||| |||||   |||||||||||||||||||| |||||||| ||||||| |||||    
T  39184044 tggttatggataccgtttttcagtggtcgttt-cgtgatagagtctgttttaggtggtgatctttattttagtgggtgttgtcc 39183962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 254
Target Start/End: Complemental strand, 24072142 - 24072050
Alignment:
Q  160 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtg 254  Q
    ||||||||||||||||||| | ||  ||||||||||| ||||||||||| |||||  | | |||||||| |||||||||||||||||||||||||    
T  24072142 tgagtagtgacgatgggtgatcatagatatcgttttttagtggtcgttt-cgtgagga-gactgttttatgtggtgatgtttattttggtgggtg 24072050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 259
Target Start/End: Complemental strand, 14302314 - 14302203
Alignment:
Q  149 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttg 247  Q
    |||||| ||| |||||||||||||  ||||||  || ||||||||||| || ||||||||| || |||  | ||||||||||||||||| || |||||||    
T  14302314 ttctttggggatgagtagtgacgacaggtggtgttggatatcgtttttacattggtcgttttcgcgaaggaatctgttttaggtggtgacgtgtattttg 14302215  T
Q  248 gtgggtgatgtc 259  Q
    ||||||| ||||    
T  14302214 gtgggtgttgtc 14302203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 259
Target Start/End: Complemental strand, 33110050 - 33109957
Alignment:
Q  167 tgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtgatgtc 259  Q
    ||||||||||||||  || ||||||||||| |||||||||||| ||||||   || ||||||||||| ||| || |||||||||||||| ||||    
T  33110050 tgacgatgggtggtattggatatcgtttttacagtggtcgttttcgtgaaggggtttgttttaggtgatgacgtgtattttggtgggtgttgtc 33109957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 33258750 - 33258665
Alignment:
Q  149 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtgg 233  Q
    |||||| ||||||||||||| |||||| ||||  || ||||||||||| ||||||||| || |||||| |  ||||||||||||||    
T  33258750 ttctttaggggtgagtagtggcgatggatggtattggatatcgtttttacagtggtcgctttcgtgaagagatctgttttaggtgg 33258665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 7682815 - 7682870
Alignment:
Q  199 gtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtg 254  Q
    ||||||||||  |||||  ||||| |||||||||||||||| ||||||||||||||    
T  7682815 gtggtcgtttttgtgaaagagtctattttaggtggtgatgtgtattttggtgggtg 7682870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 7195101 - 7195059
Alignment:
Q  218 agtctgttttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
    ||||||||||||||||||| || |||||||||||||| |||||    
T  7195101 agtctgttttaggtggtgacgtgtattttggtgggtgttgtcc 7195059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 8297694 - 8297785
Alignment:
Q  159 gtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgg 251  Q
    ||||||||||||||| |||||||  | | ||||||||| || ||||| ||| | ||||  ||| |||||||||||||||||| |||||||||||    
T  8297694 gtgagtagtgacgataggtggtt--ggaaatcgtttttacattggtctttttcttgaaggagtgtgttttaggtggtgatgtgtattttggtgg 8297785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 254
Target Start/End: Complemental strand, 22675132 - 22675102
Alignment:
Q  224 ttttaggtggtgatgtttattttggtgggtg 254  Q
    |||||||||||||||||||||||||||||||    
T  22675132 ttttaggtggtgatgtttattttggtgggtg 22675102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 30097600 - 30097654
Alignment:
Q  205 gtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtgatgtc 259  Q
    |||| ||||||  ||||||||||||||||||| || |||||||||||||| ||||    
T  30097600 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtgttgtc 30097654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 24072274 - 24072226
Alignment:
Q  14 ttggggttatttttgtgttctttcggtgtatcggaggttgagaggtggt 62  Q
    |||||||| |||| |||||||||||||| | |||||||||| |||||||    
T  24072274 ttggggtttttttggtgttctttcggtggaccggaggttgaaaggtggt 24072226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 26405354 - 26405306
Alignment:
Q  212 tgaataagtctgttttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
    |||| |||||||||||||||||||| || ||||||||||| || |||||    
T  26405354 tgaagaagtctgttttaggtggtgacgtgtattttggtggttgttgtcc 26405306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 39024306 - 39024259
Alignment:
Q  157 gggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcg 205  Q
    |||||||||||||||||| ||| ||||| ||||||||||||| ||||||    
T  39024306 gggtgagtagtgacgatgagtg-ttatggatatcgtttttcaatggtcg 39024259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 260
Target Start/End: Complemental strand, 32935337 - 32935101
Alignment:
Q  23 tttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgag 122  Q
    |||| ||||||||||||||  ||  |||||| |||||||||  ||| | ||||| ||||||| ||||| |||||||||||   ||| |||||||||||||    
T  32935337 ttttagtgttctttcggtggttcaaaggttgggaggtggtggaagctgcatgatctttcgaacatgagtttttcggatgtaactcagctttggtgatgag 32935238  T
Q  123 gatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtct 222  Q
     |  | || |||||||||||| | | || ||| ||||| |||||||| |||||||||||||||||||||||||| || || ||||| ||| ||  |||||    
T  32935237 cactgtgagtttcatttagagggatgtttttt-ggggtcagtagtgatgatgggtggttatgtatatcgtttttgagggggcgttttcgttaaggagtct 32935139  T
Q  223 gttttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
     |||||||||||| |||||||||||||||||| |||||    
T  32935138 attttaggtggtggtgtttattttggtgggtgttgtcc 32935101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 17278326 - 17278260
Alignment:
Q  193 ttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
    ||||||||| |||||| ||||||  |||||| |||||||||| ||||||||||||||||||| |||||    
T  17278326 ttttcagtgttcgttt-cgtgaaggagtctgatttaggtggtaatgtttattttggtgggtgttgtcc 17278260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 20701793 - 20701710
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttg 114  Q
    ||||||||||| ||||||||| ||||||| |||  ||| ||||||| ||||| ||| ||| |||||| |||||| |||||||||    
T  20701793 ttctttcggtggatcggaggtcgagaggtagtggaagctgaatgatctttcggataggagcttttcgaatgtggctcaactttg 20701710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 260
Target Start/End: Complemental strand, 33968518 - 33968395
Alignment:
Q  132 tttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggt 231  Q
    |||||||||||| ||| || ||| ||| |||||||||| ||||  |||||||| ||| | |||||||||||||||||  || ||  ||||||||||||||    
T  33968518 tttcatttagaggggtgttattttgggatgagtagtgatgatgc-tggttatggataccatttttcagtggtcgtttt-gtaaaagagtctgttttaggt 33968421  T
Q  232 ggtgatgtttattttggtgggtgatgtcc 260  Q
    |   |||| |||||||||||||| |||||    
T  33968420 g---atgtctattttggtgggtgttgtcc 33968395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 15120410 - 15120361
Alignment:
Q  211 gtgaataagtctgttttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
    |||||| |||||||||||||||||||||| ||||||||||| || |||||    
T  15120410 gtgaatgagtctgttttaggtggtgatgtgtattttggtggatgttgtcc 15120361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 20701664 - 20701583
Alignment:
Q  156 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    |||||||||||||||||||||| ||  || ||||||||||| ||||||| | || |||||||  ||||||| ||||||||||    
T  20701664 ggggtgagtagtgacgatgggtagtattggatatcgtttttacagtggttgctttcgtgaatgggtctgttataggtggtga 20701583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 16180715 - 16180683
Alignment:
Q  219 gtctgttttaggtggtgatgtttattttggtgg 251  Q
    |||||||||||||||||||||||||||||||||    
T  16180715 gtctgttttaggtggtgatgtttattttggtgg 16180683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 259
Target Start/End: Complemental strand, 13098382 - 13098347
Alignment:
Q  224 ttttaggtggtgatgtttattttggtgggtgatgtc 259  Q
    ||||||||||||||||||||||||||||||| ||||    
T  13098382 ttttaggtggtgatgtttattttggtgggtgttgtc 13098347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 21266263 - 21266369
Alignment:
Q  97 ggatgtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt 196  Q
    |||||||| |||  ||||||| ||||||| |||  |||| |||| | |||| ||| || |||||||||||||||||| ||| ||| || || ||||||||    
T  21266263 ggatgtggctcagttttggtgttgaggattgagt-tttcttttacaacggtgttcctttggggtgagtagtgacgat-ggttgttctggatgtcgttttt 21266360  T
Q  197 cagtggtcg 205  Q
    |||||||||    
T  21266361 cagtggtcg 21266369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 259
Target Start/End: Original strand, 12296322 - 12296480
Alignment:
Q  101 gtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagt 200  Q
    |||| ||||||| |||||||||||  |||  |||||||||||| ||| || ||| ||| ||||||||| ||||||||||||||| |||||||||||||||    
T  12296322 gtggctcaacttaggtgatgaggacggagtgtttcatttagaggggtgttattttgggatgagtagtggcgatgggtggttatggatatcgtttttcagt 12296421  T
Q  201 ggtcgtttacgtgaataagtctg-ttttaggtggtgatgtttattttggtgggtgatgtc 259  Q
    ||||| || ||  ||  |||||| ||||||||||||||||||||||||||||||| ||||    
T  12296422 ggtcgctt-cggaaaggagtctgtttttaggtggtgatgtttattttggtgggtgttgtc 12296480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 260
Target Start/End: Complemental strand, 22811029 - 22810919
Alignment:
Q  149 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttg 247  Q
    |||||| |||||||||||||||||||| ||||   | ||||||||||| ||||||||| || ||||||  ||||||||||||| ||||| || |||||||    
T  22811029 ttctttgggggtgagtagtgacgatggatggta--ggatatcgtttttacagtggtcggtttcgtgaagcagtctgttttaggaggtgacgtgtattttg 22810932  T
Q  248 gtgggtgatgtcc 260  Q
    |||||||| ||||    
T  22810931 gtgggtgaggtcc 22810919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 231
Target Start/End: Original strand, 19673188 - 19673392
Alignment:
Q  28 gtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcg 127  Q
    |||||||||||||| ||||  ||| || || |||||  |||  |||||||||| | ||||||  ||||||||||||| | |||||||||| ||||||  |    
T  19673188 gtgttctttcggtggatcgacggtcgatagatggtggaagctaaatgatattttggatatgaacttttcggatgtggctaaactttggtgttgaggactg 19673287  T
Q  128 agaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcg-tttttcagtggtcgtttacgtgaataagtctgttt 226  Q
    ||| ||| |||| |||  || |||||| ||||||||||||||||| || ||||  || |||| | |||| |||||||| ||| |||||| | ||||||||    
T  19673288 agagtttaattttgaggagtgttctttgggggtgagtagtgacgacggatggtgttggatattgcttttacagtggtcattttcgtgaagacgtctgttt 19673387  T
Q  227 taggt 231  Q
     ||||    
T  19673388 gaggt 19673392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 260
Target Start/End: Complemental strand, 41117957 - 41117726
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcgaga 130  Q
    |||||||| || ||| ||||| |||||||||||  ||| ||||||| ||||||||| ||| ||| |||| |||| |||  ||||||| | | ||||| ||    
T  41117957 ttctttcgatggatcagaggtcgagaggtggtggaagctgaatgatctttcgaataggagctttgcggaggtggctcaggtttggtgttcatgatcggga 41117858  T
Q  131 atttcatttagagcggtcttctttc----ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgtt 225  Q
     ||| |||  ||| ||| || ||||    |||||||||| |||||||||||||||  | ||||||||||| ||  ||| |||| |||| || ||||||||    
T  41117857 gttttattctgaggggtgtt-tttctaaaggggtgagtaatgacgatgggtggtt--ggatatcgtttttacaacggttgttttcgtgcatgagtctgtt 41117761  T
Q  226 ttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
     ||||||||||| | |||||||||||||| |||||    
T  41117760 ctaggtggtgatatgtattttggtgggtgttgtcc 41117726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 253
Target Start/End: Original strand, 46487477 - 46487570
Alignment:
Q  160 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctg-ttttaggtggtgatgtttattttggtgggt 253  Q
    ||||||||| ||||  ||||||||| |||||||||||||||||||| || | ||||  |||||| ||||||| ||||||||||||||||||||||    
T  46487477 tgagtagtggcgatatgtggttatgaatatcgtttttcagtggtcgctt-catgaaggagtctgtttttaggaggtgatgtttattttggtgggt 46487570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 260
Target Start/End: Complemental strand, 19815213 - 19814977
Alignment:
Q  28 gtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcg 127  Q
    |||||||||||||| | ||||||| ||||| |||||  |||  |||||| ||||| ||| ||  ||||| ||||||| | |||||||||| ||||||  |    
T  19815213 gtgttctttcggtggaccggaggtcgagagatggtggaagctaaatgatctttcggataggaacttttccgatgtggctaaactttggtgttgaggactg 19815114  T
Q  128 agaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttt 226  Q
    ||| ||| || | |||  || |||||| ||||||||||||||| | || ||||  || ||||| ||||| | |||||| ||| |||||| | ||||||||    
T  19815113 agagtttaatcttgagaagtgttctttgggggtgagtagtgacaacggatggtattggatatcatttttaccgtggtcattttcgtgaagacgtctgttt 19815014  T
Q  227 tagg---tggtgatgtttattttggtgggtgatgtcc 260  Q
     |||   |||||| || | |||||||||||| |||||    
T  19815013 gaggtactggtgacgtgttttttggtgggtgttgtcc 19814977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 260
Target Start/End: Original strand, 49747739 - 49747850
Alignment:
Q  149 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttg 247  Q
    |||||| ||||||||||||||| ||||| |||  || || |||||||| || ||||||||| ||||||  |||||||||||||||||||  |  ||||||    
T  49747739 ttctttaggggtgagtagtgacaatgggcggtgttggat-tcgtttttacaatggtcgttttcgtgaaagagtctgttttaggtggtgacatgaattttg 49747837  T
Q  248 gtgggtgatgtcc 260  Q
    ||||||| |||||    
T  49747838 gtgggtgttgtcc 49747850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 20632339 - 20632261
Alignment:
Q  164 tagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttat 243  Q
    ||||| ||| |||||||||||| ||||||| ||||||||| ||||  |||||  ||||||||||||| ||||||||||||    
T  20632339 tagtggcgacgggtggttatgtgtatcgttcttcagtggttgttt-tgtgaaagagtctgttttagggggtgatgtttat 20632261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 254
Target Start/End: Original strand, 48098546 - 48098649
Alignment:
Q  149 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttg 247  Q
    |||||| ||||||||||||||||| |||| || ||| ||||||||||| ||||||||||||  ||||  |||  ||||||||||||||| || || ||||    
T  48098546 ttctttgggggtgagtagtgacgacgggttgtgatggatatcgtttttacagtggtcgtttttgtga--aagagtgttttaggtggtgacgtgta-tttg 48098642  T
Q  248 gtgggtg 254  Q
    |||||||    
T  48098643 gtgggtg 48098649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 260
Target Start/End: Complemental strand, 38637095 - 38636992
Alignment:
Q  156 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtg 254  Q
    |||||||||||||||||||||||||  || ||||| ||||| ||| ||| |||| ||||||  ||| |||||||||||||||  | |||||| |||||||    
T  38637095 ggggtgagtagtgacgatgggtggt--tggatatcatttttacagcggttgttttcgtgaaggagtttgttttaggtggtgacatgtattttcgtgggtg 38636998  T
Q  255 atgtcc 260  Q
     |||||    
T  38636997 ttgtcc 38636992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 43373907 - 43373865
Alignment:
Q  218 agtctgttttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
    |||| |||||||| ||||||||||||||||||||||| |||||    
T  43373907 agtcagttttagggggtgatgtttattttggtgggtgttgtcc 43373865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 49528163 - 49528249
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 117  Q
    ||||||||||| ||||||||| | |||||||||  ||  ||||||| ||||| |||  || ||| ||||||||||||| ||||||||    
T  49528163 ttctttcggtggatcggaggtcgggaggtggtggaagatgaatgatctttcggatagaagctttgcggatgtggttcagctttggtg 49528249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 250
Target Start/End: Complemental strand, 892 - 803
Alignment:
Q  160 tgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtg 250  Q
    ||||||||||||||| ||||||||| |||||||||| ||||| || ||  ||||||  |||||||||||||||||||||||||||||||||    
T  892 tgagtagtgacgatgagtggttatggatatcgttttccagtgatcattc-cgtgaaagagtctgttttaggtggtgatgtttattttggtg 803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 260
Target Start/End: Complemental strand, 823450 - 823195
Alignment:
Q  5 agtttggtgttggggttatttttgtgttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtgg 104  Q
    ||||| || ||||| ||||||| |||||||||||||  | | ||||||||||||||| |  ||| ||||||| |||  |||| ||  ||||| |||||||    
T  823450 agttttgttttgggcttattttggtgttctttcggtagaccagaggttgagaggtggcggaagctgaatgatcttttcaataggacattttcagatgtgg 823351  T
Q  105 ttcaactttggtgatgaggatcgagaatttcatttagagcggtctt-ctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggt 203  Q
     |||| | |||| || ||||    |  ||| | |||||| ||| || ||||  |||||||||| | ||| ||||||||||| ||||||||||||||||||    
T  823350 ctcaattatggtaataaggacatggtgtttgaattagagaggtgtttcttttagggtgagtagaggcgaagggtggttatggatatcgtttttcagtggt 823251  T
Q  204 cgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
     ||||  ||||   ||| ||||||||||||||| ||| |||||||||||||||||||    
T  823250 tgttt-tgtgatggagtttgttttaggtggtgaagttaattttggtgggtgatgtcc 823195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 260
Target Start/End: Original strand, 27399140 - 27399267
Alignment:
Q  132 tttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggtt-atgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttagg 230  Q
    |||||||||||  ||| |||||| ||| ||||||||| | |||||||||| ||  |||||||||| |||||||||||  ||||||  || ||||||||||    
T  27399140 tttcatttagacgggtgttcttttgggctgagtagtggcaatgggtggtttatagatatcgtttt-cagtggtcgttg-cgtgaaggagcctgttttagg 27399237  T
Q  231 tggtgatgtttattttggtgggtgatgtcc 260  Q
    || ||||||||||||||||||||| |||||    
T  27399238 tgatgatgtttattttggtgggtgttgtcc 27399267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 259
Target Start/End: Original strand, 37123601 - 37123703
Alignment:
Q  158 ggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtgat 256  Q
    ||||||||||||| |  ||||||  || ||||||||||| |||||||||||| |||||| |||||| |||||  ||||||||| |||||||||||||| |    
T  37123601 ggtgagtagtgacaacaggtggtgttggatatcgtttttacagtggtcgttttcgtgaagaagtctattttatatggtgatgtgtattttggtgggtgtt 37123700  T
Q  257 gtc 259  Q
    |||    
T  37123701 gtc 37123703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 12086489 - 12086558
Alignment:
Q  186 atatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtg 254  Q
    ||||||||||| ||||| |||||| | ||||||  |||||||||||||||||||||||||||||||||||    
T  12086489 atatcgtttttacagtgatcgttttcttgaatacatctgttttaggtggtgatgtttattttggtgggtg 12086558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 260
Target Start/End: Complemental strand, 25594406 - 25594307
Alignment:
Q  160 tgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtgatgt 258  Q
    ||||||||| |||||||||||| || ||||||||||| ||||||||||||  |||||  ||| |||||||||| |||||||||||| ||||||||| |||    
T  25594406 tgagtagtggcgatgggtggtt-tggatatcgttttttcagtggtcgtttt-gtgaaggagtatgttttaggtagtgatgtttattgtggtgggtgttgt 25594309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 32010016 - 32010072
Alignment:
Q  192 tttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttgg 248  Q
    |||||||| |||||||| ||||||  |||||||||||||||||||||||||||||||    
T  32010016 tttttcagaggtcgttttcgtgaaggagtctgttttaggtggtgatgtttattttgg 32010072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 14194152 - 14194247
Alignment:
Q  156 ggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtg 254  Q
    |||||||||||||||||||| |||||  | |||||||| |||||||| || || |||||   ||||||||||||||||||| || ||||||||||||||    
T  14194152 ggggtgagtagtgacgatggatggtt--ggatatcgttattcagtgg-cgatttcgtgatggagtctgttttaggtggtgacgtgtattttggtgggtg 14194247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 260
Target Start/End: Complemental strand, 13018246 - 13018085
Alignment:
Q  98 gatgtggttcaactttggtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttc 197  Q
    ||||||| |||||| ||||||||||||  | |  ||| |||||||  ||  ||||||  |||||||||||| | ||||||| | ||| ||||| |||||     
T  13018246 gatgtggctcaactatggtgatgaggacagggtgtttgatttagatgggcgttcttttagggtgagtagtggcaatgggtgatcatggatatcatttttt 13018147  T
Q  198 agtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
    |||||| ||||  ||||   ||||||||||||||||||| ||| |||||||||| ||||||||    
T  13018146 agtggttgtttt-gtgatggagtctgttttaggtggtgaagttaattttggtggatgatgtcc 13018085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 174
Target Start/End: Complemental strand, 39021267 - 39021122
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatattt-cgaatatgaggttttcggatgtggttcaactttggtgatgaggatcgag 129  Q
    |||||| |||| ||||||||| ||||| ||||| |||| || |||| ||| || ||||||| ||||||||||||| | | |||||||| ||||||  |||    
T  39021267 ttcttttggtggatcggaggtcgagagatggtggtagctgattgatcttttcggatatgagtttttcggatgtggcttagctttggtgttgaggactgag 39021168  T
Q  130 aatttcatttaga-gcggtcttctttcggggtgagtagtgacgatg 174  Q
    | |||||||| || |||   |||||| || ||||||||||||||||    
T  39021167 agtttcattttgacgcgtgtttctttgggtgtgagtagtgacgatg 39021122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 14879648 - 14879708
Alignment:
Q  149 ttctttcggggtgagtagtgacgatgggtggttatgtatatcg-tttttcagtggtcgttt 208  Q
    |||||||||||||| ||||||||||| |||||  || |||||| |||||||||||||||||    
T  14879648 ttctttcggggtgaatagtgacgatgtgtggtgttggatatcgttttttcagtggtcgttt 14879708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 1652692 - 1652649
Alignment:
Q  217 aagtctgttttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
    ||||| |||||||| ||||||||||||||||||||||| |||||    
T  1652692 aagtcagttttagggggtgatgtttattttggtgggtgttgtcc 1652649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 25647777 - 25647863
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 117  Q
    |||||| |||| ||||||||| |||||||||||| ||  ||||||| |||||  |||||| |||||||| |||| |||  |||||||    
T  25647777 ttcttttggtggatcggaggtcgagaggtggtgaaagttgaatgatctttcggttatgagcttttcggacgtggctcagttttggtg 25647863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 23328233 - 23328188
Alignment:
Q  136 atttagagcggtcttctttcggggtgagtagtgacgatgggtggtt 181  Q
    |||| ||| ||| |||||| ||||||||||||||||||||||||||    
T  23328233 attttgagtggtgttctttgggggtgagtagtgacgatgggtggtt 23328188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 254
Target Start/End: Complemental strand, 40689597 - 40689521
Alignment:
Q  177 tggttatgtatatcgtttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtg 254  Q
    |||||||| ||||||||||||| || ||||||  ||||| || | | ||||| ||||||||||||||||| |||||||    
T  40689597 tggttatgaatatcgtttttcaatgatcgtttt-gtgaagaaattttttttaagtggtgatgtttatttttgtgggtg 40689521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 46358266 - 46358181
Alignment:
Q  160 tgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttatt 244  Q
    |||||||||  |||| ||||||||| || |||||||| ||   ||||||| ||||||  ||||||||||||||| |||||||||||    
T  46358266 tgagtagtggtgatgcgtggttatggatttcgttttttcatatgtcgttttcgtgaaggagtctgttttaggtgatgatgtttatt 46358181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 28937574 - 28937498
Alignment:
Q  158 ggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtgg 233  Q
    ||||||||||| |||||||||||  || ||||||||||| ||||||||  || ||||||   |||||||||||||||    
T  28937574 ggtgagtagtggcgatgggtggtattggatatcgtttttacagtggtcactttcgtgaaggggtctgttttaggtgg 28937498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 33143813 - 33143733
Alignment:
Q  157 gggtgagtagtgacgatgggtggttatgtatatcgttt-ttcagtggtcgtttacgtgaataagtctgttttaggtggtga 236  Q
    |||||||||||||||| || |||   || ||||||||| ||||||||| |||| ||||||  ||| |||||||||||||||    
T  33143813 gggtgagtagtgacgacggatggggttggatatcgtttgttcagtggtggttttcgtgaaggagtttgttttaggtggtga 33143733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 260
Target Start/End: Complemental strand, 10248430 - 10248325
Alignment:
Q  156 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttggtgggtg 254  Q
    ||||||||||||||||||||||| |   | || |||||||| |||||||||||| ||||||  ||| ||||||||||||||| || |||||||| |||||    
T  10248430 ggggtgagtagtgacgatgggtgttgtgggatgtcgtttttacagtggtcgttttcgtgaaggagtttgttttaggtggtgacgtgtattttggcgggtg 10248331  T
Q  255 atgtcc 260  Q
     |||||    
T  10248330 ttgtcc 10248325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 254
Target Start/End: Complemental strand, 17720626 - 17720489
Alignment:
Q  115 gtgatgaggatcgagaatttcatttagagcggtcttctttcggggtgagtagtgacgatgggtggttatgtatatcgtttttcagtggtcgtttacgtga 214  Q
    ||||||||||  |||  |||||||||||| ||| |  ||| ||||||||||||||||||  ||||||||||||||| ||||| || |||| |||  ||||    
T  17720626 gtgatgaggacggagtgtttcatttagaggggtttatttttggggtgagtagtgacgatatgtggttatgtatatctttttttagaggtc-ttttggtga 17720528  T
Q  215 ataagtctgttttaggtggtgatgtttattttggtgggtg 254  Q
    |  ||| |||||||||| ||||||||| |||| |||||||    
T  17720527 aggagtttgttttaggtagtgatgttt-ttttagtgggtg 17720489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 260
Target Start/End: Complemental strand, 17656606 - 17656494
Alignment:
Q  150 tctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgttta-cgtgaataagtctgttttaggtggtgatgtttattttg 247  Q
    ||||| ||||||||||||||| ||| | |||  || ||||||||||| ||||||||||||  | ||||  |||||||||||| |||||| ||  ||||||    
T  17656606 tctttgggggtgagtagtgacaatgagcggtgttggatatcgtttttgcagtggtcgtttttcttgaaggagtctgttttagatggtgacgtgaattttg 17656507  T
Q  248 gtgggtgatgtcc 260  Q
    ||||||| |||||    
T  17656506 gtgggtgttgtcc 17656494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 251
Target Start/End: Complemental strand, 12197945 - 12197842
Alignment:
Q  149 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgt-ttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttg 247  Q
    |||||| ||||||||||||||||| |||||||  || ||||||| |||| ||||||||| | | ||||   ||||||| |||||||||| || ||||||     
T  12197945 ttctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgtgttcatgaaggcgtctgttgtaggtggtgacgtgtattttt 12197846  T
Q  248 gtgg 251  Q
    ||||    
T  12197845 gtgg 12197842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 251
Target Start/End: Complemental strand, 12442373 - 12442270
Alignment:
Q  149 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgt-ttttcagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttg 247  Q
    |||||| ||||||||||||||||| |||||||  || ||||||| |||| ||||||||| | | ||||   ||||||| |||||||||| || ||||||     
T  12442373 ttctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgtgttcatgaaggcgtctgttgtaggtggtgacgtgtattttt 12442274  T
Q  248 gtgg 251  Q
    ||||    
T  12442273 gtgg 12442270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 260
Target Start/End: Complemental strand, 25184953 - 25184918
Alignment:
Q  225 tttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
    |||||||||||||||||||||||||||||| |||||    
T  25184953 tttaggtggtgatgtttattttggtgggtgttgtcc 25184918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 17656992 - 17656906
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtg 117  Q
    ||||||||||| ||||||||| || ||||||||  ||| ||||||| ||||  ||| ||| ||||| || |||| ||||||||||||    
T  17656992 ttctttcggtggatcggaggtcgataggtggtggaagctgaatgatctttcatataggagcttttcagaggtggctcaactttggtg 17656906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 30235932 - 30235890
Alignment:
Q  218 agtctgttttaggtggtgatgtttattttggtgggtgatgtcc 260  Q
    |||| |||||||| ||||||||||||||||||||||| |||||    
T  30235932 agtcagttttagggggtgatgtttattttggtgggtgttgtcc 30235890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 248
Target Start/End: Original strand, 58218 - 58439
Alignment:
Q  31 ttctttcggtgtatcggaggttgagaggtggtgatagcggaatgatatttcgaatatgaggttttcggatgtggttcaactttggtgatgaggatcgaga 130  Q
    ||||||||||| ||||||||| ||||| || ||  ||| |||| || ||||| ||| ||| |||||| |||||| ||| |||||||| |  |||  ||||    
T  58218 ttctttcggtggatcggaggtcgagagatgatggaagctgaattatctttcggataagagcttttcgaatgtggctcagctttggtgttcgggactgaga 58317  T
Q  131 atttcatttagagcggtctt---ctttcggggtgagtagtgacgatgggtggttatgtatatc-gtttttcagtggtcgtttacgtgaataagtctgttt 226  Q
     ||| |||| |||  || ||   |||| || |||||||||||||| |||| ||  || ||||| ||||| || ||||||||| ||||||  |||||||||    
T  58318 gtttaattttgaggagtgttgttctttgggtgtgagtagtgacgacgggtagtgttggatatcagttttacaatggtcgttttcgtgaaggagtctgttt 58417  T
Q  227 taggtggtgatgtttattttgg 248  Q
    | ||||||||||| || |||||    
T  58418 ttggtggtgatgtgtactttgg 58439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 254
Target Start/End: Original strand, 36920 - 37023
Alignment:
Q  149 ttctttcggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttattttg 247  Q
    |||||| |||||||||||||||| ||| |||||  | || |||||||| ||||||| |||| ||||||  ||||||||||||||||||| || |||||||    
T  36920 ttctttgggggtgagtagtgacggtggatggtt--ggatgtcgtttttacagtggtggttt-cgtgaaggagtctgttttaggtggtgacgtgtattttg 37016  T
Q  248 gtgggtg 254  Q
     ||||||    
T  37017 ttgggtg 37023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 259
Target Start/End: Original strand, 6828 - 6863
Alignment:
Q  224 ttttaggtggtgatgtttattttggtgggtgatgtc 259  Q
    ||||||||||||||||||||||||||||||| ||||    
T  6828 ttttaggtggtgatgtttattttggtgggtgttgtc 6863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 42004 - 41915
Alignment:
Q  156 ggggtgagtagtgacgatgggtggttatgtatatcgttttt-cagtggtcgtttacgtgaataagtctgttttaggtggtgatgtttatttt 246  Q
    |||| ||||||||||||||||||||  || |||||||||||  || |||||||| || |||  | | |||||||||||||||||| ||||||    
T  42004 ggggcgagtagtgacgatgggtggt--tggatatcgtttttatagaggtcgtttccgagaaggaatttgttttaggtggtgatgtgtatttt 41915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University