View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8063_high_12 (Length: 227)
Name: NF8063_high_12
Description: NF8063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8063_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 34407099 - 34407294
Alignment:
| Q |
14 |
cgaagaatatatcagagtgtggaaatacaacaacaaaggcatttatatgataaagtctgcatactagtccgcaatggaaacactcattgacaatgaggag |
113 |
Q |
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| T |
34407099 |
cgaagaatatatcagagtgtggaaatacaacaacaaaggcatttatatgataaagtctgcatactagtccgcaatggaaacactcattgacaatgaggag |
34407198 |
T |
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| Q |
114 |
tatcgaatttaaggtgattggagtaaactatagag---cttacaaatacctcaaagagttaaaagatttttgtggagagtatcgagaggatgtctt |
206 |
Q |
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| T |
34407199 |
tatcgaatttaaggtgattggagtaaactatatagcttcttacaaatacctcaaagagttaaaagatttttgtggagagtagcgagaggatgtctt |
34407294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 190
Target Start/End: Original strand, 2422098 - 2422204
Alignment:
| Q |
84 |
gcaatggaaacactcattgacaatgaggagtatcgaatttaaggtgattggagtaaactatagagcttacaaatacctcaaagagttaaaagatttttgt |
183 |
Q |
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|||||||||||||||||||| |||||| ||||||||||| |||||||| |||| |||| ||||| | ||||| ||||||||||||| ||| |||| |
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| T |
2422098 |
gcaatggaaacactcattgataatgagaagtatcgaattccgagtgattggggtaagctatgaagcttgaagataccacaaagagttaaaatattattgt |
2422197 |
T |
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| Q |
184 |
ggagagt |
190 |
Q |
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| T |
2422198 |
ggcgagt |
2422204 |
T |
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