View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8063_high_9 (Length: 300)

Name: NF8063_high_9
Description: NF8063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8063_high_9
NF8063_high_9
[»] chr4 (12 HSPs)
chr4 (1-284)||(27385345-27385628)
chr4 (92-201)||(10542579-10542688)
chr4 (227-282)||(11254908-11254963)
chr4 (227-282)||(35402646-35402701)
chr4 (227-282)||(41760705-41760760)
chr4 (227-282)||(49524223-49524278)
chr4 (227-284)||(32652949-32653006)
chr4 (234-282)||(2692264-2692312)
chr4 (234-282)||(51013025-51013073)
chr4 (81-158)||(10544973-10545050)
chr4 (234-282)||(11641187-11641235)
chr4 (227-282)||(41760577-41760632)
[»] chr7 (16 HSPs)
chr7 (227-282)||(47385185-47385240)
chr7 (227-282)||(69215-69270)
chr7 (227-282)||(6604616-6604671)
chr7 (227-284)||(11683688-11683745)
chr7 (229-282)||(45360429-45360482)
chr7 (227-282)||(24227399-24227454)
chr7 (227-282)||(34775940-34775995)
chr7 (227-282)||(35692329-35692384)
chr7 (131-213)||(366760-366842)
chr7 (234-284)||(4321795-4321845)
chr7 (227-280)||(23905232-23905285)
chr7 (234-282)||(38473102-38473150)
chr7 (227-282)||(22154991-22155046)
chr7 (227-282)||(22210906-22210961)
chr7 (234-278)||(32840561-32840605)
chr7 (234-282)||(48311046-48311094)
[»] chr2 (15 HSPs)
chr2 (234-282)||(44708800-44708848)
chr2 (227-282)||(14388072-14388127)
chr2 (227-282)||(17697317-17697372)
chr2 (227-282)||(39456269-39456324)
chr2 (234-282)||(2768031-2768079)
chr2 (234-282)||(6784266-6784314)
chr2 (227-282)||(6798616-6798671)
chr2 (227-282)||(24206509-24206564)
chr2 (227-282)||(34401161-34401216)
chr2 (234-282)||(16764063-16764111)
chr2 (238-284)||(38149365-38149411)
chr2 (227-284)||(20941802-20941858)
chr2 (134-223)||(26584787-26584876)
chr2 (69-158)||(42003492-42003581)
chr2 (241-282)||(42518406-42518447)
[»] chr8 (13 HSPs)
chr8 (227-282)||(3152509-3152564)
chr8 (227-282)||(5037527-5037582)
chr8 (227-282)||(15307383-15307438)
chr8 (227-282)||(15487752-15487807)
chr8 (234-282)||(27405121-27405169)
chr8 (234-282)||(40338651-40338699)
chr8 (227-282)||(41041563-41041618)
chr8 (247-284)||(10770938-10770975)
chr8 (234-278)||(13485119-13485163)
chr8 (227-284)||(28432934-28432991)
chr8 (227-275)||(27692257-27692305)
chr8 (234-282)||(29238292-29238340)
chr8 (227-275)||(33707795-33707843)
[»] chr6 (8 HSPs)
chr6 (227-282)||(7371961-7372016)
chr6 (227-282)||(9399209-9399264)
chr6 (227-282)||(32517962-32518017)
chr6 (227-277)||(32438063-32438113)
chr6 (242-282)||(18644387-18644427)
chr6 (227-275)||(20524478-20524526)
chr6 (81-139)||(17936561-17936619)
chr6 (74-107)||(21134982-21135015)
[»] chr5 (12 HSPs)
chr5 (227-282)||(42472461-42472516)
chr5 (227-284)||(1344296-1344353)
chr5 (234-282)||(17575034-17575082)
chr5 (234-282)||(17575754-17575802)
chr5 (234-282)||(17577065-17577113)
chr5 (227-282)||(21842092-21842147)
chr5 (84-186)||(9221684-9221786)
chr5 (227-281)||(28821485-28821539)
chr5 (227-282)||(2180862-2180917)
chr5 (227-282)||(18624293-18624348)
chr5 (69-107)||(24498120-24498158)
chr5 (227-284)||(28036375-28036432)
[»] chr3 (18 HSPs)
chr3 (227-282)||(17516420-17516475)
chr3 (227-282)||(27898093-27898148)
chr3 (227-282)||(30599186-30599241)
chr3 (131-223)||(23876948-23877040)
chr3 (234-282)||(46198837-46198885)
chr3 (227-282)||(43766232-43766287)
chr3 (227-282)||(53188678-53188733)
chr3 (227-282)||(54899552-54899607)
chr3 (81-139)||(32842442-32842500)
chr3 (229-278)||(35904731-35904780)
chr3 (227-274)||(610705-610752)
chr3 (227-282)||(2378100-2378155)
chr3 (247-284)||(23876218-23876255)
chr3 (227-284)||(41945427-41945484)
chr3 (227-275)||(2661325-2661373)
chr3 (81-117)||(32844419-32844455)
chr3 (227-275)||(44795310-44795358)
chr3 (74-114)||(49494481-49494521)
[»] chr1 (13 HSPs)
chr1 (227-282)||(25277345-25277400)
chr1 (227-282)||(37087320-37087375)
chr1 (227-282)||(37345427-37345482)
chr1 (81-223)||(42559882-42560024)
chr1 (229-282)||(50555081-50555134)
chr1 (234-282)||(33600122-33600170)
chr1 (227-282)||(6817694-6817749)
chr1 (227-282)||(26224523-26224578)
chr1 (227-282)||(27088377-27088432)
chr1 (227-282)||(45045481-45045536)
chr1 (227-282)||(15105537-15105592)
chr1 (69-116)||(42557957-42558004)
chr1 (227-284)||(42558846-42558903)
[»] scaffold0564 (1 HSPs)
scaffold0564 (227-282)||(9360-9415)
[»] scaffold0004 (1 HSPs)
scaffold0004 (227-282)||(107564-107619)
[»] scaffold0722 (1 HSPs)
scaffold0722 (84-140)||(4903-4959)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 27385345 - 27385628
Alignment:
1 tagaaatgagaaattttaaaatgaaacgaggagaacaatgtctatgtcatgtttaagttttggaaatggagtcaatcattaacttcgtccttgaatttgc 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||    
27385345 tagaaatgagaaattttaaaatgaaatgaggagaacaatgtctatgtcatgtttaagttttggaaatggactgaatcatcaacttcgtccttgaatttgc 27385444  T
101 aaggatcaatcaaattcattttttaatttgttgaaatatcaaattaatctttgaatttaatagatatctatcaaatttatccctccgtctaatctctccg 200  Q
    ||  |  |||||||||||||  |||||||||||||||||||||||||||| ||||||||||||  ||  |||||||| |||| |||||| ||||||||||    
27385445 aaacactaatcaaattcattccttaatttgttgaaatatcaaattaatctctgaatttaataggcattcatcaaattcatccatccgtccaatctctccg 27385544  T
201 tcagtgagactgatgtgtcgtccatgagctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttcat 284  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||    
27385545 tcagtgaggctgatgtgtcgtccatgagctcagttcctatacaatcaactttgtccatcaaccttgtcttccaaacctcttcat 27385628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 201
Target Start/End: Original strand, 10542579 - 10542688
Alignment:
92 tgaatttgcaaggatcaatcaaattcattttttaatttgttgaaatatcaaattaatctttgaatttaatagatatctatcaaatttatccctccgtcta 191  Q
    |||||||| ||||||||||||||||  | ||||||||||| |||||| ||||||| || || ||| |||   |  || |||||||||||||||||||| |    
10542579 tgaatttgtaaggatcaatcaaatttgtcttttaatttgtcgaaatagcaaattagtccttaaatctaacgaacgtccatcaaatttatccctccgtcca 10542678  T
192 atctctccgt 201  Q
    ||||||||||    
10542679 atctctccgt 10542688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 11254963 - 11254908
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||||||||||||||| |||||||||| |||||||||||||    
11254963 agctcacttcctacacaattaactttatccaacaaccttgccctccaaacctcttc 11254908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 35402701 - 35402646
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||    
35402701 agctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 35402646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 41760760 - 41760705
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||    
41760760 agctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 41760705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 49524223 - 49524278
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||    
49524223 agctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 49524278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 32652949 - 32653006
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttcat 284  Q
    |||||| |||||||||||| |||||| ||||||||||||||| |||||||||| ||||    
32652949 agctcacttcctatacaatcaactttttccatcaaccttgccctccaaacctcgtcat 32653006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 2692312 - 2692264
Alignment:
234 ttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| ||||| |||||||||||||||||||||| |||||||||||||    
2692312 ttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 2692264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 51013025 - 51013073
Alignment:
234 ttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| ||||| |||||||||||||||||||||| |||||||||||||    
51013025 ttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 51013073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 10545050 - 10544973
Alignment:
81 aacttcgtccttgaatttgcaaggatcaatcaaattcattttttaatttgttgaaatatcaaattaatctttgaattt 158  Q
    |||||||||| ||||||| |||||||||||||| ||  |  |||||||||| |||||| | ||||| |||||||||||    
10545050 aacttcgtccctgaatttccaaggatcaatcaattttgtcctttaatttgtcgaaatagctaattagtctttgaattt 10544973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 11641187 - 11641235
Alignment:
234 ttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| ||||| |||||||||||||||||||||| ||||| |||||||    
11641187 ttcctacacaatcaactttatccatcaaccttgccctccaatcctcttc 11641235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 41760632 - 41760577
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| ||||||  |||| |||||||| ||||||||||||| |||||||||||||    
41760632 agctcacttcctacccaatcaactttatgcatcaaccttgccctccaaacctcttc 41760577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 47385240 - 47385185
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||    
47385240 agctcacttcctacacaatcaactttatccatcaaccttgccttccaaacctcttc 47385185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 69215 - 69270
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||    
69215 agctcacttcctacacaatgaactttatccatcaaccttgccctccaaacctcttc 69270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 6604616 - 6604671
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||||||||| |||||||||||||||||||||| | |||||||||||    
6604616 agctcacttcctatacaatcaactttatccatcaaccttgcccttcaaacctcttc 6604671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 11683688 - 11683745
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttcat 284  Q
    |||||| |||||||||| | |||||| ||||||||||||||| |||||||||||||||    
11683688 agctcacttcctatacactcaactttgtccatcaaccttgccctccaaacctcttcat 11683745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 45360429 - 45360482
Alignment:
229 ctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||| |||||||||||| |||||| ||||||||||||||| |||||||||||||    
45360429 ctcacttcctatacaatcaactttttccatcaaccttgccctccaaacctcttc 45360482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 24227454 - 24227399
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||||| ||||||| |||||    
24227454 agctcacttcctacacaatcaactttatccatcaaccttgccctccaaacttcttc 24227399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 34775995 - 34775940
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||| ||||||||||||| |||||||||||||    
34775995 agctcacttcctacacaatcaactttattcatcaaccttgccctccaaacctcttc 34775940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 35692384 - 35692329
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| ||||||||||| |||||||||| |||||||||||||    
35692384 agctcacttcctacacaatcaactttatccaccaaccttgccctccaaacctcttc 35692329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 366760 - 366842
Alignment:
131 ttgaaatatcaaattaatctttgaatttaatagatatctatcaaatttatccctccgtctaatctctccgtcagtgagactga 213  Q
    |||||||||||||||| ||  ||||||||| |||  ||||||||||| ||||||||||| |||| | |||| |||||| ||||    
366760 ttgaaatatcaaattagtccctgaatttaacagacgtctatcaaattcatccctccgtccaatcccaccgttagtgaggctga 366842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 4321845 - 4321795
Alignment:
234 ttcctatacaattaactttatccatcaaccttgccttccaaacctcttcat 284  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||| ||||    
4321845 ttcctatacaatcaactttgtccatcaaccttgccctccaaacctcgtcat 4321795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 23905285 - 23905232
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctct 280  Q
    |||||| |||||| ||||| |||||||||||||||||||| | |||||||||||    
23905285 agctcacttcctacacaatcaactttatccatcaaccttgtcctccaaacctct 23905232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 38473150 - 38473102
Alignment:
234 ttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| ||||| |||||||||||||||| ||||| |||||||||||||    
38473150 ttcctacacaatcaactttatccatcaactttgccctccaaacctcttc 38473102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 22154991 - 22155046
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| || || |||||||||||||||||||| | |||||||||||||    
22154991 agctcacttcctacacgatcaactttatccatcaaccttgtcctccaaacctcttc 22155046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 22210906 - 22210961
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| || || |||||||||||||||||||| | |||||||||||||    
22210906 agctcacttcctacacgatcaactttatccatcaaccttgtcctccaaacctcttc 22210961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 32840561 - 32840605
Alignment:
234 ttcctatacaattaactttatccatcaaccttgccttccaaacct 278  Q
    |||||| ||||| |||||| ||||||||||||||| |||||||||    
32840561 ttcctacacaatcaactttgtccatcaaccttgccctccaaacct 32840605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 48311046 - 48311094
Alignment:
234 ttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||  ||||||||||||||| ||||| |||||||||||||    
48311046 ttcctacacaatcgactttatccatcaacattgccctccaaacctcttc 48311094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 44708848 - 44708800
Alignment:
234 ttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||    
44708848 ttcctacacaattaactttatccatcaaccttgccctccaaacctcttc 44708800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 14388127 - 14388072
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||    
14388127 agctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 14388072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 17697317 - 17697372
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||    
17697317 agctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 17697372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 39456269 - 39456324
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||    
39456269 agctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 39456324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 2768031 - 2768079
Alignment:
234 ttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| ||||| |||||||||||||||||||||| |||||||||||||    
2768031 ttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 2768079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 6784314 - 6784266
Alignment:
234 ttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| ||||| |||||||||||||||||||||| |||||||||||||    
6784314 ttcctaaacaatcaactttatccatcaaccttgccctccaaacctcttc 6784266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 6798616 - 6798671
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||| ||||||||||||| |||||||||||||    
6798616 agctcacttcctacacaatcaactttattcatcaaccttgccctccaaacctcttc 6798671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 24206564 - 24206509
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| | ||| |||||||||||||||||||||| |||||||||||||    
24206564 agctcacttcctacataatcaactttatccatcaaccttgccctccaaacctcttc 24206509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 34401216 - 34401161
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| ||||||  |||| |||||||||||||||||||||| |||||||||||||    
34401216 agctcacttcctactcaatcaactttatccatcaaccttgccctccaaacctcttc 34401161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 16764063 - 16764111
Alignment:
234 ttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| ||||| |||||||||||||||||||||| || ||||||||||    
16764063 ttcctacacaatcaactttatccatcaaccttgccctctaaacctcttc 16764111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 38149365 - 38149411
Alignment:
238 tatacaattaactttatccatcaaccttgccttccaaacctcttcat 284  Q
    |||||||| |||||| ||||||||||||||| |||||||||| ||||    
38149365 tatacaatcaactttgtccatcaaccttgccctccaaacctcgtcat 38149411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 20941802 - 20941858
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttcat 284  Q
    |||||| |||||| ||||| |||||| ||||||||||||| | |||||||||||||||    
20941802 agctcacttcctacacaatcaactttgtccatcaaccttg-catccaaacctcttcat 20941858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 26584876 - 26584787
Alignment:
134 aaatatcaaattaatctttgaatttaatagatatctatcaaatttatccctccgtctaatctctccgtcagtgagactgatgtgtcgtcc 223  Q
    ||||||||||||||||  | |||||||||||  || |||||||| ||||||||||| | || ||| |  |||||| |||| |||||||||    
26584876 aaatatcaaattaatccctcaatttaatagacgtccatcaaattcatccctccgtccattccctctggtagtgaggctgacgtgtcgtcc 26584787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 158
Target Start/End: Complemental strand, 42003581 - 42003492
Alignment:
69 gagtcaatcattaacttcgtccttgaatttgcaaggatcaatcaaattcattttttaatttgttgaaatatcaaattaatctttgaattt 158  Q
    |||| ||||||||||||||| |||||||||  |||||||| |||||||| ||  | ||||    |||||||||| ||||||| |||||||    
42003581 gagtgaatcattaacttcgttcttgaatttttaaggatcagtcaaattcgttcatcaattatgcgaaatatcaatttaatctctgaattt 42003492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 42518447 - 42518406
Alignment:
241 acaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    ||||| |||||||||||||||||||||| ||||||| |||||    
42518447 acaatcaactttatccatcaaccttgccctccaaacttcttc 42518406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 3152564 - 3152509
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||||||||| |||||||||||||||||||||| ||||| |||||||    
3152564 agctcacttcctatacaatcaactttatccatcaaccttgccctccaagcctcttc 3152509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 5037527 - 5037582
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| ||||||||| ||||||||||||||||||||||||||    
5037527 agctcacttcctacacaatcaactttatcgatcaaccttgccttccaaacctcttc 5037582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 15307383 - 15307438
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||    
15307383 agctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 15307438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 15487752 - 15487807
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||    
15487752 agctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 15487807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 27405169 - 27405121
Alignment:
234 ttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| ||||| |||||||||||||||||||||| |||||||||||||    
27405169 ttcctagacaatcaactttatccatcaaccttgccctccaaacctcttc 27405121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 40338699 - 40338651
Alignment:
234 ttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| ||||| |||||||||||||||||||||| |||||||||||||    
40338699 ttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 40338651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 41041618 - 41041563
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||||| | |||||||||||    
41041618 agctcacttcctacacaatcaactttatccatcaaccttgcccttcaaacctcttc 41041563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 10770975 - 10770938
Alignment:
247 aactttatccatcaaccttgccttccaaacctcttcat 284  Q
    |||||| |||||||||||||||||||||||||||||||    
10770975 aactttgtccatcaaccttgccttccaaacctcttcat 10770938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 13485163 - 13485119
Alignment:
234 ttcctatacaattaactttatccatcaaccttgccttccaaacct 278  Q
    |||||| ||||| |||||||||||||||||||||| |||||||||    
13485163 ttcctacacaatcaactttatccatcaaccttgccctccaaacct 13485119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 28432991 - 28432934
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttcat 284  Q
    |||||| ||| |||||||| ||||||  |||||||||||||| |||||||||| ||||    
28432991 agctcacttcttatacaatcaactttgcccatcaaccttgccctccaaacctcgtcat 28432934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 27692257 - 27692305
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaa 275  Q
    |||||| |||||| ||||| |||||||||||||||||||| | ||||||    
27692257 agctcacttcctacacaatcaactttatccatcaaccttgtcctccaaa 27692305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 29238292 - 29238340
Alignment:
234 ttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| ||||| ||||||||||| |||||||||| | |||||||||||    
29238292 ttcctacacaatcaactttatccaccaaccttgcccttcaaacctcttc 29238340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 33707843 - 33707795
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaa 275  Q
    |||||| |||||| ||||| |||||||||||||||||||| | ||||||    
33707843 agctcacttcctacacaatcaactttatccatcaaccttgtcctccaaa 33707795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 7372016 - 7371961
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||    
7372016 agctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 7371961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 9399209 - 9399264
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||| |||||||||||||||||||    
9399209 agctcatttcctacacaatcaactttatccatcaactttgccttccaaacctcttc 9399264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 32517962 - 32518017
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||    
32517962 agctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 32518017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 32438113 - 32438063
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacc 277  Q
    |||||| |||||| ||||| |||||||||||||||||||||| ||||||||    
32438113 agctcacttcctacacaatcaactttatccatcaaccttgccctccaaacc 32438063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 18644387 - 18644427
Alignment:
242 caattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||| |||||||||||||||||||||| |||||||||||||    
18644387 caatcaactttatccatcaaccttgccctccaaacctcttc 18644427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 20524478 - 20524526
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaa 275  Q
    |||||| |||||| ||||| |||||||||||||||||||||| ||||||    
20524478 agctcacttcctacacaatcaactttatccatcaaccttgccctccaaa 20524526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 17936619 - 17936561
Alignment:
81 aacttcgtccttgaatttgcaaggatcaatcaaattcattttttaatttgttgaaatat 139  Q
    |||||||||||||||||||||||||| |||||  ||| | ||| ||||||| |||||||    
17936619 aacttcgtccttgaatttgcaaggataaatcagtttcgtctttcaatttgtcgaaatat 17936561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 21134982 - 21135015
Alignment:
74 aatcattaacttcgtccttgaatttgcaaggatc 107  Q
    |||||||||||||||||||||||||| |||||||    
21134982 aatcattaacttcgtccttgaatttgtaaggatc 21135015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 42472516 - 42472461
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||    
42472516 agctcacttcctagacaatcaactttatccatcaaccttgccctccaaacctcttc 42472461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 1344296 - 1344353
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttcat 284  Q
    |||||| |||||||||||| |||||| ||||||||||||||| |||||||||| ||||    
1344296 agctcacttcctatacaatcaactttgtccatcaaccttgccctccaaacctcatcat 1344353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 17575034 - 17575082
Alignment:
234 ttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| ||||| |||||||||||||||||||||| |||||||||||||    
17575034 ttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 17575082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 17575754 - 17575802
Alignment:
234 ttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| ||||| |||||||||||||||||||||| |||||||||||||    
17575754 ttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 17575802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 17577065 - 17577113
Alignment:
234 ttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| ||||| |||||||||||||||||||||| |||||||||||||    
17577065 ttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 17577113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 21842092 - 21842147
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||| | |||||||||||||    
21842092 agctcacttcctacacaatcaactttatccatcaaccttgtcctccaaacctcttc 21842147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 186
Target Start/End: Complemental strand, 9221786 - 9221684
Alignment:
84 ttcgtccttgaatttgcaaggatcaatcaaattcattttttaatttgttgaaatatcaaattaatctttgaatttaatagatatctatcaaatttatccc 183  Q
    |||||| || ||||||||||||||| |||||||| | |   ||||| ||||||||||||||||   | ||||||||| ||| ||| |||||||| |||||    
9221786 ttcgtctttaaatttgcaaggatcagtcaaattcgtctcccaattttttgaaatatcaaattagcttctgaatttaacagacatccatcaaattcatccc 9221687  T
184 tcc 186  Q
    |||    
9221686 tcc 9221684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 28821485 - 28821539
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctctt 281  Q
    |||||| |||||| ||||| ||||||||||||||||||| || ||||||||||||    
28821485 agctcacttcctacacaatcaactttatccatcaacctttccctccaaacctctt 28821539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 2180862 - 2180917
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| ||||||||| |||||||||| | |||||||||||||    
2180862 agctcacttcctacacaatcaactttatcgatcaaccttgtcctccaaacctcttc 2180917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 18624348 - 18624293
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| ||||| |||||||||||||| | |||||||||||||    
18624348 agctcacttcctacacaatcaacttcatccatcaaccttgtcatccaaacctcttc 18624293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 24498158 - 24498120
Alignment:
69 gagtcaatcattaacttcgtccttgaatttgcaaggatc 107  Q
    |||| ||||||||||||||||| ||||||||||||||||    
24498158 gagtgaatcattaacttcgtccgtgaatttgcaaggatc 24498120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 28036432 - 28036375
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttcat 284  Q
    |||||| |||||| ||||| || ||| ||||||||||||||| ||||||| |||||||    
28036432 agctcacttcctacacaatcaattttgtccatcaaccttgccctccaaacttcttcat 28036375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 17516420 - 17516475
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||    
17516420 agctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 17516475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 27898148 - 27898093
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||    
27898148 agctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 27898093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 30599241 - 30599186
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||    
30599241 agctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 30599186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 23877040 - 23876948
Alignment:
131 ttgaaatatcaaattaatctttgaatttaatagatatctatcaaatttatccctccgtctaatctctccgtcagtgagactgatgtgtcgtcc 223  Q
    |||||||||||||||| ||| ||||||||| | |  || |||||||| ||||||||||| |||| |||||| |||||| || | |||||||||    
23877040 ttgaaatatcaaattagtctctgaatttaacaaacgtccatcaaattcatccctccgtccaatccctccgttagtgaggctaacgtgtcgtcc 23876948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 46198837 - 46198885
Alignment:
234 ttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| ||||| |||||||||||||||||||||| |||||||||||||    
46198837 ttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 46198885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 43766232 - 43766287
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| | |||||||||||||||||||| |||||||||||||    
43766232 agctcacttcctacacaatcagctttatccatcaaccttgccctccaaacctcttc 43766287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 53188733 - 53188678
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||| ||||| |||||||||||||    
53188733 agctcacttcctacacaatcaactttatccatcaactttgccctccaaacctcttc 53188678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 54899552 - 54899607
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| ||||||| |||||||||||||| |||||||||||||    
54899552 agctcacttcctacacaatcaactttacccatcaaccttgccctccaaacctcttc 54899607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 139
Target Start/End: Original strand, 32842442 - 32842500
Alignment:
81 aacttcgtccttgaatttgcaaggatcaatcaaattcattttttaatttgttgaaatat 139  Q
    ||||||||||||||||||||||||||||||||  ||| | ||| ||||||| |||||||    
32842442 aacttcgtccttgaatttgcaaggatcaatcagtttcgtctttcaatttgtcgaaatat 32842500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 35904780 - 35904731
Alignment:
229 ctcagttcctatacaattaactttatccatcaaccttgccttccaaacct 278  Q
    |||| |||||| ||||| |||||||||||||||||||||| |||||||||    
35904780 ctcacttcctacacaatcaactttatccatcaaccttgccctccaaacct 35904731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 274
Target Start/End: Original strand, 610705 - 610752
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaa 274  Q
    |||||| |||||| ||||| |||||||||||||||||||||| |||||    
610705 agctcacttcctacacaatcaactttatccatcaaccttgccctccaa 610752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 2378100 - 2378155
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| ||||||  |||| |||||||||||||||||||||  |||||||||||||    
2378100 agctcatttcctacgcaatcaactttatccatcaaccttgctctccaaacctcttc 2378155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 23876255 - 23876218
Alignment:
247 aactttatccatcaaccttgccttccaaacctcttcat 284  Q
    |||||| ||||||||||||||| |||||||||||||||    
23876255 aactttgtccatcaaccttgccctccaaacctcttcat 23876218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 41945427 - 41945484
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttcat 284  Q
    |||||| |||||||||||| |||||| ||||||||||||| | || ||||||| ||||    
41945427 agctcacttcctatacaatcaactttgtccatcaaccttgtcctctaaacctcgtcat 41945484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 2661325 - 2661373
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaa 275  Q
    |||||| |||||| ||||| |||||||||||||||||||| | ||||||    
2661325 agctcacttcctacacaatcaactttatccatcaaccttgtcctccaaa 2661373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 32844455 - 32844419
Alignment:
81 aacttcgtccttgaatttgcaaggatcaatcaaattc 117  Q
    |||||||||||||| ||||||||||| ||||||||||    
32844455 aacttcgtccttgagtttgcaaggattaatcaaattc 32844419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 44795310 - 44795358
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaa 275  Q
    |||||| |||||| ||||| |||||||||||||||||||| | ||||||    
44795310 agctcacttcctacacaatcaactttatccatcaaccttgtcctccaaa 44795358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 49494481 - 49494521
Alignment:
74 aatcattaacttcgtccttgaatttgcaaggatcaatcaaa 114  Q
    |||||| |||||||||| |||||||||||| ||||||||||    
49494481 aatcatcaacttcgtccctgaatttgcaagcatcaatcaaa 49494521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 25277400 - 25277345
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||    
25277400 agctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 25277345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 37087320 - 37087375
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||    
37087320 agctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 37087375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 37345427 - 37345482
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||    
37345427 agctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 37345482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 223
Target Start/End: Complemental strand, 42560024 - 42559882
Alignment:
81 aacttcgtccttgaatttgcaaggatcaatcaaattcattttttaatttgttgaaatatcaaattaatctttgaatttaatagatatctatcaaatttat 180  Q
    |||||||| |||||||||||||||| |||||||||  ||  |  ||||| | ||||||| |||||  ||| | || |||| |||  || |||||||| ||    
42560024 aacttcgttcttgaatttgcaaggaccaatcaaatatatcctccaatttatcgaaatattaaatttgtctctaaaattaacagacgtccatcaaattcat 42559925  T
181 ccctccgtctaatctctccgtcagtgagactgatgtgtcgtcc 223  Q
    ||||||||| |||||||| || |||||| |||||| |||||||    
42559924 ccctccgtccaatctctctgttagtgaggctgatgcgtcgtcc 42559882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 50555134 - 50555081
Alignment:
229 ctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||| |||||| ||||| |||||||||||||||||||||| |||||||||||||    
50555134 ctcacttcctacacaatcaactttatccatcaaccttgccctccaaacctcttc 50555081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 33600170 - 33600122
Alignment:
234 ttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| ||||| |||||||||||||||||||||| |||||||||||||    
33600170 ttcctagacaatcaactttatccatcaaccttgccctccaaacctcttc 33600122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 6817749 - 6817694
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| ||| || ||||| |||||||||||||||||||||| |||||||||||||    
6817749 agctcacttcttacacaatcaactttatccatcaaccttgccctccaaacctcttc 6817694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 26224578 - 26224523
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||||| | |||||||||||    
26224578 agctcacttcctacacaatcaactttatccatcaaccttgcccttcaaacctcttc 26224523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 27088377 - 27088432
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||| | |||||||||||||    
27088377 agctcacttcctacacaatcaactttatccatcaaccttgtcctccaaacctcttc 27088432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 45045536 - 45045481
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| ||||||||||||||| |||||| |||||||||||||    
45045536 agctcacttcctacacaatcaactttatccatcaagcttgccctccaaacctcttc 45045481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 15105537 - 15105592
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| ||||| |||||||||||||| | |||||||||||||    
15105537 agctcatttcctacacaatcaacttcatccatcaaccttgtcatccaaacctcttc 15105592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 42557957 - 42558004
Alignment:
69 gagtcaatcattaacttcgtccttgaatttgcaaggatcaatcaaatt 116  Q
    |||| |||||| |||||||||||| |||||||||||| ||||||||||    
42557957 gagtgaatcatcaacttcgtccttaaatttgcaaggaccaatcaaatt 42558004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 42558903 - 42558846
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttcat 284  Q
    |||||| |||||| ||| | |||||| |||||||||| |||| |||||||||||||||    
42558903 agctcacttcctacacagtcaactttgtccatcaaccatgccctccaaacctcttcat 42558846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 9360 - 9415
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| ||||||||| |||||||||||| |||||||||||||    
9360 agctcacttcctacacaatcaactttatcgatcaaccttgccctccaaacctcttc 9415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 107619 - 107564
Alignment:
227 agctcagttcctatacaattaactttatccatcaaccttgccttccaaacctcttc 282  Q
    |||||| |||||| ||||| |||||||||||||||||||||| || ||||||||||    
107619 agctcacttcctacacaatcaactttatccatcaaccttgccctcaaaacctcttc 107564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 4959 - 4903
Alignment:
84 ttcgtccttgaatttgcaaggatcaatcaaattcattttttaatttgttgaaatatc 140  Q
    |||||||||||||||| ||||||||| |||||||||  || ||||||| ||||||||    
4959 ttcgtccttgaatttgtaaggatcaaccaaattcatccttcaatttgtcgaaatatc 4903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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