View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8063_low_1 (Length: 724)
Name: NF8063_low_1
Description: NF8063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8063_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 648; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 36 - 715
Target Start/End: Complemental strand, 10995801 - 10995122
Alignment:
| Q |
36 |
aacctgtgcgtgagtgttacgttgcgtatagatactgaagtctttagtccattcgaacaaccgtaaaagtccaggtttcaaattcaccgtacccatcgcc |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10995801 |
aacctgtgcgtgagtgttacgttgcgtatagatactgaagtctttagtccattcgaacaaccgtaaaagtccaggtttcaaattcaccgtacccaacgcc |
10995702 |
T |
|
| Q |
136 |
caaaccaatcgtaaatcatcctcggaggcaaatgagaattcataaaatccccttcctaaagaacgcaaggaccacgcgcctgtaatcttccaaagatttt |
235 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10995701 |
caaaccgatcgtaaatcatcctcggaggcaaatgagaattcataaaatccccttcctaaagaacgcaaggaccacgcgcctgtaatattccaaagatttt |
10995602 |
T |
|
| Q |
236 |
catttctagatcctttttcatgtaaggtttatcacccttgtttaaaaccaattgaccgcataaattccgcttgcaagcatccaatcctttctcatagact |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
10995601 |
catttctagatcctttttcatgtaaggtttatcacccttgtttaaaaccaattgaccacgtaaattccgcttgcaagcatccaatcctttctcatagact |
10995502 |
T |
|
| Q |
336 |
gtctgtgagatcttaatgcttagaacctcccctcgaatggatggcagaggcagattgtcattcgaataatcagaagctgctgcagatgcatcctggtcat |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10995501 |
gtctgtgagatcttaatgcttagaacctcccctcgaatggatggcagaggcagattgtcattcgaataatcagaagctactgcagatgcatcctggtcat |
10995402 |
T |
|
| Q |
436 |
ccacttgcttctgggactcggcaacttcttggaatgtttccataaagattttgcaaaaagctcatccttaagttcaccatcagcaaaatccctagcatgc |
535 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
10995401 |
ccacttgcttctgggactcggcaacttcttggaatgtttccataaagattttgcaaaaagctcatccttaagttcaccatcagcaaaatccctggcatgc |
10995302 |
T |
|
| Q |
536 |
caaacacaagatttctcattctcatcatactcttgaacgctcatcgtaggtataatgagatgattagcgcagatattgagtgtcttcgattgcctcatga |
635 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10995301 |
caaacacaagatttctcattctcatcatactcttgaacgctcatcgtaggtataatgagatgattagcgcagatattgagtgtcttcgattgcctcatga |
10995202 |
T |
|
| Q |
636 |
gaagcctcactttaccagtaaccttatgcttcaagaacttcaccgtaccagcacctctctccttccactgatgtccatct |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
10995201 |
gaagcctcactttaccagtaaccttatgcttcaagaacttcaccgtaccagcacctctctccttccactgatttccatct |
10995122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 40 - 369
Target Start/End: Original strand, 14243297 - 14243633
Alignment:
| Q |
40 |
tgtgcgtgagtgttacgttgcgtatagatactgaagtctttagtccattcgaacaaccgtaaaagtccaggtttcaaattcaccgtacccatcgcccaaa |
139 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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|
| T |
14243297 |
tgtgcgtgagtgttacattgcgtatagatactgaagtctttagtccattcgaacaaccgcaacagtccaggtttcaaattcaccgtacccatcgcccaaa |
14243396 |
T |
|
| Q |
140 |
ccaatcgtaaatcatcctcggaggcaaatgagaattcataaaatccccttcctaaagaacgcaaggaccacgcgcctgtaatcttccaaag-------at |
232 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
14243397 |
ccgatcgtaaatcatcctcggaggcaaatgagaattcataaaatccccttcctaaagaacacaaggaccacgcgcctgtaatcttccaaagcttctgaag |
14243496 |
T |
|
| Q |
233 |
tttcatttctagatcctttttcatgtaaggtttatcacccttgtttaaaaccaattgaccgcataaattccgcttgcaagcatccaatcctttctcatag |
332 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||| || |||||||||||||||| |
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|
| T |
14243497 |
tttcagttctagatcatttttcatgtaaggtttatcacccttgttcaaaaccaaacgaccgcgtaaattccgcttgcaaacaaccaatcctttctcatac |
14243596 |
T |
|
| Q |
333 |
actgtctgtgagatcttaatgcttagaacctcccctc |
369 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14243597 |
actgtctgcgagatcttaatgcttagaacctcccctc |
14243633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 591 - 715
Target Start/End: Original strand, 2237579 - 2237703
Alignment:
| Q |
591 |
tgagatgattagcgcagatattgagtgtcttcgattgcctcatgagaagcctcactttaccagtaaccttatgcttcaagaacttcaccgtaccagcacc |
690 |
Q |
| |
|
||||||||||||| || || || || || |||||||||||||| |||||| ||||||||||||||| |||||||||||||||| |||| |||||||||| |
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|
| T |
2237579 |
tgagatgattagcacaaatcttaagggttttcgattgcctcataagaagcttcactttaccagtaaacttatgcttcaagaacgtcactataccagcacc |
2237678 |
T |
|
| Q |
691 |
tctctccttccactgatgtccatct |
715 |
Q |
| |
|
| |||||||| || ||| ||||||| |
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|
| T |
2237679 |
tatctccttctaccgatttccatct |
2237703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 106 - 230
Target Start/End: Complemental strand, 8478396 - 8478272
Alignment:
| Q |
106 |
ccaggtttcaaattcaccgtacccatcgcccaaaccaatcgtaaatcatcctcggaggcaaatgagaattcataaaatccccttcctaaagaacgcaagg |
205 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||| |||||||||| |||||||||||||| | ||||||||| | ||||| ||||||||| | | || |
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|
| T |
8478396 |
ccaggtttcaaatttaccgttcccatcgcccaaaccgatcgtaaatcttcctcggaggcaaaataaaattcataataacccctacctaaagaaagaaggg |
8478297 |
T |
|
| Q |
206 |
accacgcgcctgtaatcttccaaag |
230 |
Q |
| |
|
|||||||||||| |||||||||| |
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|
| T |
8478296 |
accacgcgcctgatgtcttccaaag |
8478272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 365 - 407
Target Start/End: Original strand, 14248190 - 14248232
Alignment:
| Q |
365 |
ccctcgaatggatggcagaggcagattgtcattcgaataatca |
407 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| || ||||| |
|
|
| T |
14248190 |
ccctcgaatagatggcagaggcagattgtcattcaaagaatca |
14248232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 2e-54; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 591 - 715
Target Start/End: Complemental strand, 44025335 - 44025211
Alignment:
| Q |
591 |
tgagatgattagcgcagatattgagtgtcttcgattgcctcatgagaagcctcactttaccagtaaccttatgcttcaagaacttcaccgtaccagcacc |
690 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
44025335 |
tgagatgattagcgcagatcttgagtgtcttcgattgcctcatgagaagcctcactttaccagtaaccttatgcttcaagaacttgaccgtcccagcacc |
44025236 |
T |
|
| Q |
691 |
tctctccttccactgatgtccatct |
715 |
Q |
| |
|
||||||||||||||||| ||||||| |
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|
| T |
44025235 |
tctctccttccactgatttccatct |
44025211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 491 - 590
Target Start/End: Complemental strand, 44025523 - 44025424
Alignment:
| Q |
491 |
aaaagctcatccttaagttcaccatcagcaaaatccctagcatgccaaacacaagatttctcattctcatcatactcttgaacgctcatcgtaggtataa |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||| |
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|
| T |
44025523 |
aaaagctcatccttaagttcaccatcagcaaaatccctagcatgccaaacacaagatttctcattcccagcatgctcttgaacgctcatcgtaggtataa |
44025424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 410 - 491
Target Start/End: Complemental strand, 44027126 - 44027045
Alignment:
| Q |
410 |
agctgctgcagatgcatcctggtcatccacttgcttctgggactcggcaacttcttggaatgtttccataaagattttgcaa |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
44027126 |
agctgctgcagatgcatcctggtcatccacttgcttctgggactcggcaacttcttggaatgtttccataaagcttttgcaa |
44027045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 591 - 715
Target Start/End: Original strand, 34807433 - 34807557
Alignment:
| Q |
591 |
tgagatgattagcgcagatattgagtgtcttcgattgcctcatgagaagcctcactttaccagtaaccttatgcttcaagaacttcaccgtaccagcacc |
690 |
Q |
| |
|
||||||||||||| || || || || || |||||||||||||| |||||| | ||||||||||||| |||||||||||||||| | || |||||||||| |
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|
| T |
34807433 |
tgagatgattagcacaaatcttaagggttttcgattgcctcataagaagctttactttaccagtaaacttatgcttcaagaacgttactataccagcacc |
34807532 |
T |
|
| Q |
691 |
tctctccttccactgatgtccatct |
715 |
Q |
| |
|
| |||||||| || ||| ||||||| |
|
|
| T |
34807533 |
tatctccttctaccgatttccatct |
34807557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 84 - 230
Target Start/End: Original strand, 19937765 - 19937911
Alignment:
| Q |
84 |
ccattcgaacaaccgtaaaagtccaggtttcaaattcaccgtacccatcgcccaaaccaatcgtaaatcatcctcggaggcaaatgagaattcataaaat |
183 |
Q |
| |
|
|||||| ||||||| ||| | |||||||||||||| ||||| ||||||||||||||| |||||||||| |||||||||||||| | ||||||||| | |
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|
| T |
19937765 |
ccattcaaacaaccttaacaaaccaggtttcaaatttaccgttcccatcgcccaaaccgatcgtaaatcttcctcggaggcaaaataaaattcataataa |
19937864 |
T |
|
| Q |
184 |
ccccttcctaaagaacgcaaggaccacgcgcctgtaatcttccaaag |
230 |
Q |
| |
|
||||| ||||||||| ||| |||||||||||||| |||||||||| |
|
|
| T |
19937865 |
cccctacctaaagaaagcagggaccacgcgcctgatgtcttccaaag |
19937911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 591 - 675
Target Start/End: Original strand, 14707441 - 14707525
Alignment:
| Q |
591 |
tgagatgattagcgcagatattgagtgtcttcgattgcctcatgagaagcctcactttaccagtaaccttatgcttcaagaactt |
675 |
Q |
| |
|
||||||||||||| ||||| || || ||||| ||||| ||||| | |||||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
14707441 |
tgagatgattagcacagatcttaagagtctttgattgtctcataacaagcctaacttttccagtaaccttatgcttcaaaaactt |
14707525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 508 - 570
Target Start/End: Original strand, 14707051 - 14707113
Alignment:
| Q |
508 |
ttcaccatcagcaaaatccctagcatgccaaacacaagatttctcattctcatcatactcttg |
570 |
Q |
| |
|
||||||||||||||| ||| | || |||||||||||||||||||||||| || ||| |||||| |
|
|
| T |
14707051 |
ttcaccatcagcaaagtccttcgcgtgccaaacacaagatttctcattcccagcatgctcttg |
14707113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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