View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8063_low_10 (Length: 311)
Name: NF8063_low_10
Description: NF8063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8063_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 45 - 301
Target Start/End: Original strand, 47489257 - 47489513
Alignment:
| Q |
45 |
catagccaatactatcataactcatacatagccaaagaacatgcgagtggaaatagaaagcaagaaataaccccatcnnnnnnnnagaagaagaggaaaa |
144 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
47489257 |
catagccaatactatcataactcatacatagccaaagaacatgcgagtggaaatagaaagcaagaaataaccccatcttttttttataagaagaggaaaa |
47489356 |
T |
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| Q |
145 |
caagtctattttttagagcctgaaaactattttttagatgtatgctctaaccgttaatttttagaatcaggggggttgacgatctttttataaagctcat |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47489357 |
caagtctattttttagagcctgaaaactattttttagatgtatgctctaaccgttaatttttagaatcaggggggttgacgatctttttataaagctcat |
47489456 |
T |
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| Q |
245 |
tgagac-nnnnnnnntacggtgtttcgctagtatattttattcatagagttatctctg |
301 |
Q |
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| T |
47489457 |
tgagacaaaaaaatatacggtgtttcgctagaata-tttattcatagagttatctctg |
47489513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 33800728 - 33800844
Alignment:
| Q |
45 |
catagccaatactatcataactcatacatagccaaagaacatgcgagtggaaatagaaagcaagaaataaccccatcnnnnnnnnagaagaagaggaaaa |
144 |
Q |
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| T |
33800728 |
catagccaatactatcataactcatacatagccaaagaacatgcgagtggaaatagaaagcaagaaataaccccatcatttttttagaagaagaggaaaa |
33800827 |
T |
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| Q |
145 |
caagtctattttttaga |
161 |
Q |
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| T |
33800828 |
caagtctattttttaga |
33800844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 33800837 - 33800885
Alignment:
| Q |
202 |
tttttagaatcaggggggttgacgatctttttataaagctcattgagac |
250 |
Q |
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| T |
33800837 |
tttttagaatcaggggggttgacgatgtttttataaagctcattgagac |
33800885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 132 - 244
Target Start/End: Original strand, 20003738 - 20003851
Alignment:
| Q |
132 |
aagaagaggaaaacaagtct-attttttagagcctgaaaactattttttagatgtatgctctaaccgttaatttttagaatcaggggggttgacgatctt |
230 |
Q |
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|||||||||||||||| ||| |||||| ||||| ||||||||||||||||||||||||||||||| || ||| |||||| || ||||| || ||||||| |
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| T |
20003738 |
aagaagaggaaaacaattctcatttttgagagcttgaaaactattttttagatgtatgctctaactgtgaatatttagagtcggggggattagcgatctt |
20003837 |
T |
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| Q |
231 |
tttataaagctcat |
244 |
Q |
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| T |
20003838 |
tttataaagctcat |
20003851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 11618760 - 11618683
Alignment:
| Q |
164 |
ctgaaaactattttttagatgtatgctctaaccgttaatttttagaatcaggggggttgacgatctttttataaagct |
241 |
Q |
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|||| ||||||||| |||||||||||||| | || | |||||||||| | |||| ||| ||||||||||||||||| |
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| T |
11618760 |
ctgagaactattttatagatgtatgctcttgcagtgattttttagaattatggggattggtgatctttttataaagct |
11618683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 1809122 - 1809190
Alignment:
| Q |
172 |
tattttttagatgtatgctctaaccgttaatttttagaatca-ggggggttgacgatctttttataaag |
239 |
Q |
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||||||||||| || | |||||| ||||||||||||||||| ||| | |||||||||||||||||||| |
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| T |
1809122 |
tattttttagacgtgtcgtctaactgttaatttttagaatcacgggagattgacgatctttttataaag |
1809190 |
T |
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