View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8063_low_12 (Length: 294)
Name: NF8063_low_12
Description: NF8063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8063_low_12 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
| [»] scaffold0078 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 906069 - 906334
Alignment:
| Q |
18 |
ccatcatgggcaccacaagttgagattcttggtcatggttcaattggtgggtttttgagtcattgtggttggggttcaactttggagagtgtggttaatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
906069 |
ccatcatgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttgagtcattgtggttggggttcaactttggagactgtggttaatg |
906168 |
T |
|
| Q |
118 |
gggtgcctgtgattgcatggcctctatttgcagaacaaaggatgaatgcgagattattgacagatgtgctcaaagtggctgtgaggccaaaggttgacga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
906169 |
gggtgcctgtgattgcatggcctctatttgcagaacaaaggatgaatgcgagattattgacagatgtgctcaaagtggctgtgaggccaaaggttgatga |
906268 |
T |
|
| Q |
218 |
tgaaagtgggatagtgaaaagagaggaagttgctaaatgtgtaaagagaatcatggaaggtgatga |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
906269 |
tgaaagtgggatagtgaaaagagaggaagttgctaaatgtgtaaagagaatcatggaaggtgatga |
906334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 894574 - 894309
Alignment:
| Q |
18 |
ccatcatgggcaccacaagttgagattcttggtcatggttcaattggtgggtttttgagtcattgtggttggggttcaactttggagagtgtggttaatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
894574 |
ccatcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatg |
894475 |
T |
|
| Q |
118 |
gggtgcctgtgattgcatggcctctatttgcagaacaaaggatgaatgcgagattattgacagatgtgctcaaagtggctgtgaggccaaaggttgacga |
217 |
Q |
| |
|
| |||||| |||||||||||||||||||||| ||||||||||||||||| | |||||||||||||| |||||| |||||||||||||||||| |||| || |
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|
| T |
894474 |
gtgtgcctatgattgcatggcctctatttgctgaacaaaggatgaatgccaaattattgacagatgagctcaaggtggctgtgaggccaaagattgatga |
894375 |
T |
|
| Q |
218 |
tgaaagtgggatagtgaaaagagaggaagttgctaaatgtgtaaagagaatcatggaaggtgatga |
283 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
894374 |
tgaaagtgggatagtgaaaagagaagaagttgccaactgtgtaaagagaatcatggaaggtgatga |
894309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 548822 - 548590
Alignment:
| Q |
18 |
ccatcatgggcaccacaagttgagattcttggtcatggttcaattggtgggtttttgagtcattgtggttggggttcaactttggagagtgtggttaatg |
117 |
Q |
| |
|
||||||||||| ||||||||||| |||||| ||||| |||||| |||||| ||||||| ||||||||||||| |||||| ||| ||| || | ||| ||| |
|
|
| T |
548822 |
ccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatg |
548723 |
T |
|
| Q |
118 |
gggtgcctgtgattgcatggcctctatttgcagaacaaaggatgaatgcgagattattgacagatgtgctcaaagtggctgtgaggccaaaggttgacga |
217 |
Q |
| |
|
| |||||| ||||||| ||||| | ||||| || || || ||||| || || | | || ||||| |||||||||| ||||||||||| |||| || |
|
|
| T |
548722 |
gtgtgcctatgattgcttggccattgtttgctgagcagagaatgaacgctgcatcactcaccgatgttttcaaagtggcagtgaggccaaaaattgatga |
548623 |
T |
|
| Q |
218 |
tgaaagtgggatagtgaaaagagaggaagttgc |
250 |
Q |
| |
|
|||| |||||| || ||| |||| |||||||| |
|
|
| T |
548622 |
tgaagatgggattgtaaaaggagaagaagttgc |
548590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 23423782 - 23423903
Alignment:
| Q |
18 |
ccatcatgggcaccacaagttgagattcttggtcatggttcaattggtgggtttttgagtcattgtggttggggttcaactttggagagtgtggttaatg |
117 |
Q |
| |
|
||||||||||| ||||||||||| |||||| ||||| |||||| |||||| ||||||| ||||||||||||| |||||| ||| ||| || | ||| ||| |
|
|
| T |
23423782 |
ccatcatgggctccacaagttgaaattcttagtcatagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatg |
23423881 |
T |
|
| Q |
118 |
gggtgcctgtgattgcatggcc |
139 |
Q |
| |
|
| |||||| ||||||| ||||| |
|
|
| T |
23423882 |
gtgtgcctatgattgcttggcc |
23423903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 166
Target Start/End: Complemental strand, 10201936 - 10201827
Alignment:
| Q |
57 |
tcaattggtgggtttttgagtcattgtggttggggttcaactttggagagtgtggttaatggggtgcctgtgattgcatggcctctatttgcagaacaaa |
156 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| ||||||| | ||||||||||| ||||| |||||| ||||||||||||| || | ||| || |||| |
|
|
| T |
10201936 |
tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttgattgcatggccactctatgctgagcaaa |
10201837 |
T |
|
| Q |
157 |
ggatgaatgc |
166 |
Q |
| |
|
||||||||| |
|
|
| T |
10201836 |
agatgaatgc |
10201827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 166
Target Start/End: Complemental strand, 10209009 - 10208900
Alignment:
| Q |
57 |
tcaattggtgggtttttgagtcattgtggttggggttcaactttggagagtgtggttaatggggtgcctgtgattgcatggcctctatttgcagaacaaa |
156 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||| ||||||| | ||||||||||| ||||| |||||| ||||||||||||| || | ||| || |||| |
|
|
| T |
10209009 |
tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttgattgcatggccactctatgctgagcaaa |
10208910 |
T |
|
| Q |
157 |
ggatgaatgc |
166 |
Q |
| |
|
||||||||| |
|
|
| T |
10208909 |
agatgaatgc |
10208900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 566377 - 566313
Alignment:
| Q |
23 |
atgggcaccacaagttgagattcttggtcatggttcaattggtgggtttttgagtcattgtggtt |
87 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||| ||| ||||| |||||| ||||| |
|
|
| T |
566377 |
atgggcaccacaagttgaaattcttggtcatagttcaattgatggatttttatgtcattttggtt |
566313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 1963489 - 1963583
Alignment:
| Q |
18 |
ccatcatgggcaccacaagttgagattcttggtcatggttcaattggtgggtttttgagtcattgtggttggggttcaactttggagagtgtggt |
112 |
Q |
| |
|
||||||||||||||||| || | || ||| |||| |||| ||||||||||||||| ||||||||||||| |||||| | ||||||||||| |
|
|
| T |
1963489 |
ccatcatgggcaccacagattcaaatccttagtcacagttccattggtgggtttttgtctcattgtggttggaattcaacccttgagagtgtggt |
1963583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 2011534 - 2011429
Alignment:
| Q |
19 |
catcatgggcaccacaagttgagattcttggtcatggttcaattggtgggtttttgagtcattgtggttggggttcaactttggagagtgtggttaatgg |
118 |
Q |
| |
|
||||||||||||| || || | || ||| ||||| ||||| |||| ||||| |||||||| ||||||||| | ||||| | || ||||||||| |||| |
|
|
| T |
2011534 |
catcatgggcacctcagattcaaatccttagtcatagttcagttggcgggttcttgagtcactgtggttggagctcaacacttgaaagtgtggttcatgg |
2011435 |
T |
|
| Q |
119 |
ggtgcc |
124 |
Q |
| |
|
|||||| |
|
|
| T |
2011434 |
ggtgcc |
2011429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 8294525 - 8294261
Alignment:
| Q |
19 |
catcatgggcaccacaagttgagattcttggtcatggttcaattggtgggtttttgagtcattgtggttggggttcaactttggagagtgtggttaatgg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
8294525 |
catcatgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttaagtcattgtggttggagttcaactttggagagtgtggttaacgg |
8294426 |
T |
|
| Q |
119 |
ggtgcctgtgattgcatggcctctatttgcagaacaaaggatgaatgcgagattattgacagatgtgctcaaagtggctgtgaggccaaaggttgacgat |
218 |
Q |
| |
|
||||| ||||||||||||| | |||||||| |||||||||||||| | |||| | || ||||| ||||||||||| ||||||||||||||||| ||| |
|
|
| T |
8294425 |
cgtgccgttgattgcatggccattgtttgcagagcaaaggatgaatgcaaaattactcactgatgtactcaaagtggcagtgaggccaaaggttgatgat |
8294326 |
T |
|
| Q |
219 |
gaaagtgggatagtgaaaagagaggaagttgctaaatgtgtaaagagaatcatggaaggtgatga |
283 |
Q |
| |
|
|||| |||||| | ||| |||||||||||| ||| | |||| ||||||||| |||| ||||| |
|
|
| T |
8294325 |
gaaactgggattataaaacaagaggaagttgccaaagctataaaaagaatcatgaaaggagatga |
8294261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 33257230 - 33257494
Alignment:
| Q |
19 |
catcatgggcaccacaagttgagattcttggtcatggttcaattggtgggtttttgagtcattgtggttggggttcaactttggagagtgtggttaatgg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
33257230 |
catcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcattgtggttggagttcaactttggagagtgtggttaacgg |
33257329 |
T |
|
| Q |
119 |
ggtgcctgtgattgcatggcctctatttgcagaacaaaggatgaatgcgagattattgacagatgtgctcaaagtggctgtgaggccaaaggttgacgat |
218 |
Q |
| |
|
|| || ||||||||||||| | |||||||| ||||| |||||||| | |||| | || |||||||| |||||||| || |||||||||||||| | | |
|
|
| T |
33257330 |
cgttccgttgattgcatggccattgtttgcagagcaaagaatgaatgcaaaattactcactgatgtgctaaaagtggcagtaaggccaaaggttgatggt |
33257429 |
T |
|
| Q |
219 |
gaaagtgggatagtgaaaagagaggaagttgctaaatgtgtaaagagaatcatggaaggtgatga |
283 |
Q |
| |
|
|||| ||||||| | ||| |||||||||| | ||| | ||||||||||||||||||| ||||| |
|
|
| T |
33257430 |
gaaactgggataataaaacgagaggaagtctccaaagctttaaagagaatcatggaaggagatga |
33257494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 845092 - 844950
Alignment:
| Q |
24 |
tgggcaccacaagttgagattcttggtcatggttcaattggtgggtttttgagtcattgtggttggggttcaactttggagagtgtggttaatggggtgc |
123 |
Q |
| |
|
|||||||||||| |||| |||||||||||| ||||||||||||||||||| | ||||||||||||| |||||| | || ||||| || ||||| | | |
|
|
| T |
845092 |
tgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgttgtaaatggaattc |
844993 |
T |
|
| Q |
124 |
ctgtgattgcatggcctctatttgcagaacaaaggatgaatgc |
166 |
Q |
| |
|
| | || |||||||| || ||||| ||||||| ||||||||| |
|
|
| T |
844992 |
caataatagcatggccactctttgctgaacaaaagatgaatgc |
844950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 870376 - 870234
Alignment:
| Q |
24 |
tgggcaccacaagttgagattcttggtcatggttcaattggtgggtttttgagtcattgtggttggggttcaactttggagagtgtggttaatggggtgc |
123 |
Q |
| |
|
|||||||||||| |||| |||||||||||| ||||||||||||||||||| | ||||||||||||| |||||| | || ||||| || ||||| | | |
|
|
| T |
870376 |
tgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgttgtaaatggaattc |
870277 |
T |
|
| Q |
124 |
ctgtgattgcatggcctctatttgcagaacaaaggatgaatgc |
166 |
Q |
| |
|
| | || |||||||| || ||||| ||||||| ||||||||| |
|
|
| T |
870276 |
caataatagcatggccactctttgctgaacaaaagatgaatgc |
870234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 1348 - 1612
Alignment:
| Q |
19 |
catcatgggcaccacaagttgagattcttggtcatggttcaattggtgggtttttgagtcattgtggttggggttcaactttggagagtgtggttaatgg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
1348 |
catcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcattgtggttggagttcaactttggagagtgtggttaacgg |
1447 |
T |
|
| Q |
119 |
ggtgcctgtgattgcatggcctctatttgcagaacaaaggatgaatgcgagattattgacagatgtgctcaaagtggctgtgaggccaaaggttgacgat |
218 |
Q |
| |
|
|| || ||||||||||||| | |||||||| ||||| |||||||| | |||| | || |||||||| |||||||| || |||||||||||||| | | |
|
|
| T |
1448 |
cgtaccgttgattgcatggccattgtttgcagagcaaagaatgaatgcaaaattactcactgatgtgctaaaagtggcagtaaggccaaaggttgatggt |
1547 |
T |
|
| Q |
219 |
gaaagtgggatagtgaaaagagaggaagttgctaaatgtgtaaagagaatcatggaaggtgatga |
283 |
Q |
| |
|
|||| ||||||| | ||| |||||||||| | ||| | ||||||||||||||||||| ||||| |
|
|
| T |
1548 |
gaaactgggataataaaacgagaggaagtctccaaagctttaaagagaatcatggaaggagatga |
1612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 15276 - 15188
Alignment:
| Q |
19 |
catcatgggcaccacaagttgagattcttggtcatggttcaattggtgggtttttgagtcattgtggttggggttcaactttggagagt |
107 |
Q |
| |
|
||||||||||||| |||||||| || ||| ||| ||||| ||||||| ||||| ||||||||||||||| |||| |||||||||| |
|
|
| T |
15276 |
catcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaattcagttttggagagt |
15188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 57568 - 57656
Alignment:
| Q |
19 |
catcatgggcaccacaagttgagattcttggtcatggttcaattggtgggtttttgagtcattgtggttggggttcaactttggagagt |
107 |
Q |
| |
|
||||||||||||| |||||||| || ||| ||| ||||| ||||||| ||||| ||||||||||||||| |||| |||||||||| |
|
|
| T |
57568 |
catcatgggcacctcaagttgaaatacttaaacatagttcagttggtggatttttaagtcattgtggttggaattcagttttggagagt |
57656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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