View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8063_low_3 (Length: 558)

Name: NF8063_low_3
Description: NF8063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8063_low_3
NF8063_low_3
[»] chr6 (10 HSPs)
chr6 (18-349)||(787161-787492)
chr6 (343-541)||(787539-787737)
chr6 (123-287)||(9664639-9664803)
chr6 (124-294)||(3074909-3075082)
chr6 (171-294)||(21146819-21146941)
chr6 (270-331)||(8655790-8655851)
chr6 (276-348)||(24249840-24249910)
chr6 (273-349)||(6825454-6825529)
chr6 (291-349)||(23343941-23343997)
chr6 (321-349)||(8837163-8837191)
[»] chr4 (4 HSPs)
chr4 (124-295)||(55849418-55849590)
chr4 (149-349)||(55851937-55852150)
chr4 (276-349)||(5440946-5441019)
chr4 (74-122)||(33722080-33722128)
[»] chr3 (10 HSPs)
chr3 (124-349)||(20868675-20868901)
chr3 (157-294)||(27462140-27462277)
chr3 (124-294)||(24595209-24595375)
chr3 (124-349)||(51306330-51306554)
chr3 (124-294)||(20871313-20871490)
chr3 (124-245)||(51308791-51308912)
chr3 (281-349)||(52737774-52737842)
chr3 (124-199)||(35610797-35610872)
chr3 (240-294)||(27462290-27462344)
chr3 (290-349)||(4602399-4602458)
[»] chr1 (7 HSPs)
chr1 (124-270)||(20225515-20225661)
chr1 (174-349)||(20226767-20226942)
chr1 (273-349)||(18705653-18705729)
chr1 (125-190)||(20226953-20227018)
chr1 (281-349)||(9908127-9908194)
chr1 (273-330)||(29849953-29850008)
chr1 (316-349)||(35270048-35270081)
[»] chr8 (15 HSPs)
chr8 (152-327)||(35416056-35416231)
chr8 (119-288)||(12062760-12062931)
chr8 (204-348)||(3788446-3788591)
chr8 (124-288)||(369263-369425)
chr8 (155-294)||(31909100-31909236)
chr8 (124-195)||(4676130-4676201)
chr8 (124-195)||(4678075-4678146)
chr8 (281-349)||(4676285-4676354)
chr8 (285-349)||(39327-39391)
chr8 (281-327)||(26174391-26174437)
chr8 (281-349)||(7277695-7277762)
chr8 (145-268)||(3785816-3785937)
chr8 (215-306)||(19472471-19472563)
chr8 (215-306)||(19543396-19543488)
chr8 (215-306)||(19589208-19589300)
[»] chr2 (2 HSPs)
chr2 (124-294)||(26608008-26608177)
chr2 (273-349)||(24038380-24038456)
[»] chr5 (8 HSPs)
chr5 (124-265)||(27172855-27172995)
chr5 (281-348)||(35309093-35309160)
chr5 (273-349)||(41951676-41951752)
chr5 (124-195)||(39040636-39040707)
chr5 (281-349)||(30518630-30518698)
chr5 (281-349)||(30558970-30559038)
chr5 (273-349)||(21254265-21254340)
chr5 (273-306)||(26873149-26873182)
[»] chr7 (4 HSPs)
chr7 (273-349)||(41830317-41830393)
chr7 (281-349)||(34510821-34510888)
chr7 (145-288)||(2577001-2577142)
chr7 (281-348)||(36647433-36647500)
[»] scaffold0001 (1 HSPs)
scaffold0001 (270-349)||(146666-146744)


Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-175; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 787161 - 787492
Alignment:
Q  18 agaaaaagctggaagaactaaacaacaatgtaataaactaccaataaatttatgaaatgaaacacaataacatcttagaaagtggaatattaattgaaac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  787161 agaaaaagctggaagaactaaacaacaatgtaataaactaccaataaatttatgaaatgaaacacaataacatcttagaaagtggaatattaattgaaac 787260  T
Q  118 agtaaatattaagaataatgatataggtagttaggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||| |||||||||||||||||    
T  787261 agtaaatattaagaataatgatataggtagttaggacactagtttagttactatataagtcatatgattgactcatttgtaccgatctttctcattcttg 787360  T
Q  218 tatcatttcaagtatcatcaatacaatagttttccaagcttttctctctatatctatggatgacatgtttcctaacatggtatcagagcaaatatggtat 317  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  787361 tatcatttcaagtatcatcaatacaatagttttccaaacttttctctctatatctatggatgacatgtttcctaacatggtatcagagcaaatatggtat 787460  T
Q  318 ccaccttgaaggatattttccgctgcattttc 349  Q
    ||||||||||||||||||||||||||||||||    
T  787461 ccaccttgaaggatattttccgctgcattttc 787492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 343 - 541
Target Start/End: Original strand, 787539 - 787737
Alignment:
Q  343 cattttcccttccttttttcactgattccgattcagtgtcacgttcttgattcctttcttatttcaatttcgtttttctgatctcgtgattgaggaattc 442  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  787539 cattttctcttccttttttcactgattccgattcagtgtcacgttcttgattcctttcttatttcaatttcgtttttctgatctcgtgattgaggaattc 787638  T
Q  443 cttgcatcgattgttcattccttcttttcttgatttggcaatttctttttcataatcatttgaattcatttctaaagtatgtctgttgtttaccttttc 541  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  787639 cttgcatcgattgttcattccttcttttcttgatttggcaatttctttttcataatcatttgaattcatttctaaagtatgtctgttgtttaccttttc 787737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 123 - 287
Target Start/End: Complemental strand, 9664803 - 9664639
Alignment:
Q  123 atattaagaataatgatataggtagttaggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatca 222  Q
    ||||||||||| ||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||| ||||||||||||||    
T  9664803 atattaagaatgatgatatagttaattaggacactagtttagttactatataagtcacatggttgactcatttgtacctatctttttcattcttgtatca 9664704  T
Q  223 tttcaagtatcatcaatacaatagttttccaagcttttctctctatatctatggatgacatgttt 287  Q
    |||||| ||| ||||||||||||||||| |||||||||||||||||||| ||||||| |||||||    
T  9664703 tttcaactataatcaatacaatagtttttcaagcttttctctctatatccatggatgccatgttt 9664639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 124 - 294
Target Start/End: Original strand, 3074909 - 3075082
Alignment:
Q  124 tattaagaataatgatataggtagttaggacactagtttagttac--tatataagttacatggttgactcatttgtactgatctttctcattcttgtatc 221  Q
    |||||||||||||||||||| ||||||||||||||||||||||||  ||||||| | ||||||||| ||||||||||   ||||||  ||||||| ||||    
T  3074909 tattaagaataatgatatagttagttaggacactagtttagttactatatataaatcacatggttgtctcatttgtatctatcttttccattcttatatc 3075008  T
Q  222 atttcaagtatcatc-aatacaatagttttccaagcttttctctctatatctatggatgacatgtttcctaaca 294  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  3075009 atttcaactatcatcaaatacaatagttttccaagcttttctctctatatccatggatgccatgttttctaaca 3075082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 21146941 - 21146819
Alignment:
Q  171 tataagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaatagttttccaag-cttttctctctata 269  Q
    ||||||| ||||| |||||||||||||||   ||||| |||||||||||||||||||| |||  ||||||||||| ||||| |||  ||||||||||||     
T  21146941 tataagtcacatg-ttgactcatttgtacctctcttt-tcattcttgtatcatttcaactattttcaatacaataattttctaagttttttctctctatt 21146844  T
Q  270 tctatggatgacatgtttcctaaca 294  Q
    |  |||||||||||||||| |||||    
T  21146843 ttcatggatgacatgtttcttaaca 21146819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 8655851 - 8655790
Alignment:
Q  270 tctatggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggat 331  Q
    |||||||||| ||||||||||||||||||||||||||  || ||||| ||||||||||||||    
T  8655851 tctatggatgccatgtttcctaacatggtatcagagcttatctggtacccaccttgaaggat 8655790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 348
Target Start/End: Original strand, 24249840 - 24249910
Alignment:
Q  276 gatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcatttt 348  Q
    |||| |||||||||||||||||||||||||| ||| || |||||||||| ||||  |||||| ||||||||||    
T  24249840 gatgccatgtttcctaacatggtatcagagctaatctgatatccacctttaagg--attttctgctgcatttt 24249910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 349
Target Start/End: Complemental strand, 6825529 - 6825454
Alignment:
Q  273 atggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 349  Q
    ||||||| |||||||||||||||||||| ||||||    ||||||||||||||||  || |||||||||||||||||    
T  6825529 atggatgccatgtttcctaacatggtattagagcatgattggtatccaccttgaacaat-ttttccgctgcattttc 6825454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 23343941 - 23343997
Alignment:
Q  291 aacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 349  Q
    |||||||||||||||  ||  ||||||||||||||||||||||||||||||||| ||||    
T  23343941 aacatggtatcagag--aacctggtatccaccttgaaggatattttccgctgcactttc 23343997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 321 - 349
Target Start/End: Complemental strand, 8837191 - 8837163
Alignment:
Q  321 ccttgaaggatattttccgctgcattttc 349  Q
    |||||||||||||||||||||||||||||    
T  8837191 ccttgaaggatattttccgctgcattttc 8837163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 124 - 295
Target Start/End: Complemental strand, 55849590 - 55849418
Alignment:
Q  124 tattaagaataatgatataggtagttaggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcat 223  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||  ||||||  ||||||||||||||    
T  55849590 tattaagaataatgatatagttagttaggacactagttcagttactatataagtcacatggttgactcatttgtacctatcttttccattcttgtatcat 55849491  T
Q  224 ttcaagtatcatcaatacaatagtttt-ccaagcttttctctctatatctatggatgacatgtttcctaacat 295  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||    
T  55849490 ttcaactatcatcaatacaatagttttcccaagcttttctctctatatccatggatgccatgtttcctaacat 55849418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 149 - 349
Target Start/End: Complemental strand, 55852150 - 55851937
Alignment:
Q  149 taggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaatag-- 246  Q
    ||||||||||| ||||||||||||||| | |||||||||||||||||||| | ||||||  ||||||||||||||||||| |||||||||||||||||      
T  55852150 taggacactagattagttactatataactaacatggttgactcatttgtagttatcttttacattcttgtatcatttcaactatcatcaatacaatagta 55852051  T
Q  247 -------ttttccaagcttt----tctctctatatctatggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattt 335  Q
           |||||||||||||    |||||||||||| ||||||| ||||||||||||||| ||||||||||||   |||||||||||| ||| |||||||    
T  55852050 caatagtttttccaagcttttctctctctctatatccatggatgccatgtttcctaacatcgtatcagagcaagattggtatccacctcgaatgatattt 55851951  T
Q  336 tccgctgcattttc 349  Q
    ||||||||||||||    
T  55851950 tccgctgcattttc 55851937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 276 - 349
Target Start/End: Original strand, 5440946 - 5441019
Alignment:
Q  276 gatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 349  Q
    |||| |||||||||||||||||||||||||| ||  |||||||||  |||||||||||||||| ||||||||||    
T  5440946 gatgccatgtttcctaacatggtatcagagctaacctggtatccattttgaaggatattttcccctgcattttc 5441019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 33722080 - 33722128
Alignment:
Q  74 atgaaacacaataacatcttagaaagtggaatattaattgaaacagtaa 122  Q
    |||||||||| ||||| |||| |||||||||||| ||||||||||||||    
T  33722080 atgaaacacactaacagcttacaaagtggaatatcaattgaaacagtaa 33722128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 9e-59; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 124 - 349
Target Start/End: Original strand, 20868675 - 20868901
Alignment:
Q  124 tattaagaataatgatataggtagttaggacactagttt-agttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatca 222  Q
    |||||||||||||||||||| ||||||||| |||||||| ||||||||||||||| |||||||||||| ||||||||  |||||| |||||||||||| |    
T  20868675 tattaagaataatgatatagttagttaggatactagttttagttactatataagtcacatggttgacttatttgtacctatctttttcattcttgtatta 20868774  T
Q  223 t-ttcaagtatcatcaatacaatagttttccaagcttttctctctatatctatggatgacatgtttcctaacatggtatcagagcaaatatggtatccac 321  Q
    | ||||| |||||||||||||||||||||| |||||||||||||| | |  ||||||| ||||||||| |||||||||||||||||    ||||||||||    
T  20868775 tgttcaactatcatcaatacaatagttttctaagcttttctctctcttttcatggatgccatgtttcccaacatggtatcagagcatgattggtatccac 20868874  T
Q  322 cttgaaggatattttccgctgcattttc 349  Q
    ||||||  | ||||||||||||||||||    
T  20868875 cttgaaaca-attttccgctgcattttc 20868901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 157 - 294
Target Start/End: Original strand, 27462140 - 27462277
Alignment:
Q  157 tagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaatagttttccaagc 256  Q
    ||||||||||||||||||||| | |||||||||||||||||||  |||||| |||||||||||||||||||| ||| |||||||||||||||||||||||    
T  27462140 tagtttagttactatataagtcatatggttgactcatttgtacctatctttttcattcttgtatcatttcaactataatcaatacaatagttttccaagc 27462239  T
Q  257 ttttctctctatatctatggatgacatgtttcctaaca 294  Q
    ||||||||||||||| ||||||| ||||||| ||||||    
T  27462240 ttttctctctatatccatggatgccatgtttactaaca 27462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 124 - 294
Target Start/End: Original strand, 24595209 - 24595375
Alignment:
Q  124 tattaagaataatgatataggtagttaggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatca- 222  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||     
T  24595209 tattaagaataatgatatag----ttaggacactagtttagttactatataagtcacatggttgactcatttgtactaatctttttcattcttgtatcat 24595304  T
Q  223 tttcaagtatcatcaatacaatagttttccaagcttttctctctatatctatggatgacatgtttcctaaca 294  Q
    |||||| ||||||||||||||||| |||| |||||||||||||||| |  |||||||   ||||||||||||    
T  24595305 tttcaactatcatcaatacaatag-tttctaagcttttctctctatcttcatggatgttgtgtttcctaaca 24595375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 124 - 349
Target Start/End: Original strand, 51306330 - 51306554
Alignment:
Q  124 tattaagaataatgatataggtagttaggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcat 223  Q
    |||||||||||||||||||| || ||||||||||||| |||||||||||||| ||| |||||||||||| || |||| |||| | | ||| |||||||||    
T  51306330 tattaagaataatgatatagttaattaggacactagtgtagttactatataacttatatggttgactca-ttatactaatctcttttatttttgtatcat 51306428  T
Q  224 ttcaagtatcatcaatacaatagttttccaagc-ttttctctctatatctatggatgacatgtttcctaacatggtatcagagcaaatatggtatccacc 322  Q
    || || ||| ||||||||||||  |||| |||| |||||||||||| |  ||||||| ||||||||  |||||||||||||||||    |||||||||||    
T  51306429 tttaactattatcaatacaata-atttctaagctttttctctctattttcatggatgtcatgtttctcaacatggtatcagagcatgattggtatccacc 51306527  T
Q  323 ttgaaggatattttccgctgcattttc 349  Q
    |||||  || |||||||||||||||||    
T  51306528 ttgaacaattttttccgctgcattttc 51306554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 124 - 294
Target Start/End: Original strand, 20871313 - 20871490
Alignment:
Q  124 tattaagaataatgatataggtagttaggacactagttt-agttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatca 222  Q
    |||||||||| ||||||||| ||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||  |||||| |||||||||||| |    
T  20871313 tattaagaatgatgatatagttagttaggatactagttttagttactatataagtcacatggttgactcatttgtacctatctttttcattcttgtatta 20871412  T
Q  223 -tttcaagtatcat-----caatacaatagttttccaagcttttctctctatatctatggatgacatgtttcctaaca 294  Q
     |||||| ||||||     |||||||||||||||| |||||||||||||| | |  ||||||| ||||||||| ||||    
T  20871413 ttttcaactatcatcaatacaatacaatagttttctaagcttttctctctcttttcatggatgtcatgtttcccaaca 20871490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 124 - 245
Target Start/End: Original strand, 51308791 - 51308912
Alignment:
Q  124 tattaagaataatgatataggtagttaggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcat 223  Q
    |||||||||||||||||||| || ||||||| ||||| |||||||||||||||| |||||||||||||||||||||| |||| | | |||||||||||||    
T  51308791 tattaagaataatgatatagttaattaggacgctagtgtagttactatataagtcacatggttgactcatttgtactaatctcttttattcttgtatcat 51308890  T
Q  224 ttcaagtatcatcaatacaata 245  Q
    ||||| ||| ||||||||||||    
T  51308891 ttcaactattatcaatacaata 51308912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 52737842 - 52737774
Alignment:
Q  281 catgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 349  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  52737842 catgtttcctaacatggtatcagagcaaatctggtatccaccttgaaggatattttccgctgcattttc 52737774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 35610797 - 35610872
Alignment:
Q  124 tattaagaataatgatataggtagttaggacactagtttagttactatataagttacatggttgactcatttgtac 199  Q
    ||||||||||||| |||||| ||||||||  ||||||||||||||||||||||| ||| |||||||||||||||||    
T  35610797 tattaagaataataatatagttagttagggtactagtttagttactatataagtcacaaggttgactcatttgtac 35610872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 294
Target Start/End: Original strand, 27462290 - 27462344
Alignment:
Q  240 acaatagttttccaagcttttctctctatatctatggatgacatgtttcctaaca 294  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||    
T  27462290 acaatagttttccaagcttttctctctatatccatggatgccatgtttactaaca 27462344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 4602399 - 4602458
Alignment:
Q  290 taacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 349  Q
    ||||||||||||||||| ||  | |||||||||||||||||  |||||||||||||||||    
T  4602399 taacatggtatcagagctaacctagtatccaccttgaaggaatttttccgctgcattttc 4602458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 9e-56; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 124 - 270
Target Start/End: Complemental strand, 20225661 - 20225515
Alignment:
Q  124 tattaagaataatgatataggtagttaggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcat 223  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||  ||||||  ||||||||||||||    
T  20225661 tattaagaataatgatatagttagttaggacactagtttagttactatataagtcacatggttgactcttttgtacctatcttttccattcttgtatcat 20225562  T
Q  224 ttcaagtatcatcaatacaatagttttccaagcttttctctctatat 270  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||    
T  20225561 ttcaattatcatcaatacaatagttttgcaagcttttctctctatat 20225515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 174 - 349
Target Start/End: Complemental strand, 20226942 - 20226767
Alignment:
Q  174 aagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaatagttttccaagcttttct--ctctatatc 271  Q
    |||||||||||||||||| |||||||  |||||| |||||||||||||||||||| ||||||||||||||||||||| ||| |||||||  |||||||||    
T  20226942 aagttacatggttgactcttttgtacctatctttttcattcttgtatcatttcaattatcatcaatacaatagtttttcaaacttttctctctctatatc 20226843  T
Q  272 tatggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 349  Q
     ||| ||| | |||||||||||||||||||||||| ||| |||||||| |||||||||  ||||||||||||||||||    
T  20226842 catgaatgccgtgtttcctaacatggtatcagagctaatctggtatcctccttgaagg--attttccgctgcattttc 20226767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 273 - 349
Target Start/End: Complemental strand, 18705729 - 18705653
Alignment:
Q  273 atggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 349  Q
    ||||||| ||||||| |||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||    
T  18705729 atggatgccatgttttctaacatggtatcagagctaatctggtatccaccttgaaggattttttccgctgcattttc 18705653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 20227018 - 20226953
Alignment:
Q  125 attaagaataatgatataggtagttaggacactagtttagttactatataagttacatggttgact 190  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | ||||||||||    
T  20227018 attaagaataatgatatagttagctaggacactagtttagttactatataagtcatatggttgact 20226953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 9908194 - 9908127
Alignment:
Q  281 catgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 349  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||| || ||||||||||||| ||||    
T  9908194 catgtttcctaacatggtatcagagctaatctggtatccaccttgaa-gaaattttccgctgcactttc 9908127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 29850008 - 29849953
Alignment:
Q  273 atggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaagga 330  Q
    ||||||| |||||||| |||||||||||||||||||  ||||||||||||||||||||    
T  29850008 atggatgccatgtttcataacatggtatcagagcaa--atggtatccaccttgaagga 29849953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 349
Target Start/End: Complemental strand, 35270081 - 35270048
Alignment:
Q  316 atccaccttgaaggatattttccgctgcattttc 349  Q
    |||||||||||| |||||||||||||||||||||    
T  35270081 atccaccttgaatgatattttccgctgcattttc 35270048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 6e-54; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 152 - 327
Target Start/End: Complemental strand, 35416231 - 35416056
Alignment:
Q  152 gacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaatagttttc 251  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||| |||||  ||||| |||||||||||||| || ||| ||||||||||||||     
T  35416231 gacactagtttagtgactatataagtcacatggttgactcatttgtacttatcttcttcattattgtatcatttcaactaccattaatacaatagttttt 35416132  T
Q  252 caagcttttctctctatatctatggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaa 327  Q
    ||||||||||||||||| | |||||||| |||||||| |||||||||||||||||| |  ||||||||||||||||    
T  35416131 caagcttttctctctatttttatggatgccatgtttcttaacatggtatcagagcataattggtatccaccttgaa 35416056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 119 - 288
Target Start/End: Original strand, 12062760 - 12062931
Alignment:
Q  119 gtaaatattaagaataatgatataggtagttaggacactagttt-agttactatataagttacatggttgactcatttgtactgatctttctcattcttg 217  Q
    |||| |||||||||||||||||||| |||||| || |||||||| ||||||||||||||| |||||||||||||||||||||  |  | | |||||||||    
T  12062760 gtaactattaagaataatgatatagttagttaagatactagttttagttactatataagtcacatggttgactcatttgtacccacatctttcattcttg 12062859  T
Q  218 tatca-tttcaagtatcatcaatacaatagttttccaagcttttctctctatatctatggatgacatgtttc 288  Q
    ||| | ||||||  |||||||| | |||||||||| |||||||||||||||| |  ||||||| ||||||||    
T  12062860 tattattttcaaccatcatcaagagaatagttttctaagcttttctctctattttcatggatgccatgtttc 12062931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 204 - 348
Target Start/End: Complemental strand, 3788591 - 3788446
Alignment:
Q  204 ctttctcattcttgtatcatttcaagtatcatcaatacaatagttttccaagctt-ttctctctatatctatggatgacatgtttcctaacatggtatca 302  Q
    |||| |||||||||||||||||||| ||| |||||||||||| ||||| || ||| |||||||||| |  ||||||| ||||||||  ||||||||||||    
T  3788591 ctttttcattcttgtatcatttcaactattatcaatacaataattttctaaacttcttctctctattttcatggatgccatgtttctcaacatggtatca 3788492  T
Q  303 gagcaaatatggtatccaccttgaaggatattttccgctgcatttt 348  Q
    |||||    ||||||||||||||||  || ||||||||||||||||    
T  3788491 gagcatgattggtatccaccttgaacaattttttccgctgcatttt 3788446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 124 - 288
Target Start/End: Original strand, 369263 - 369425
Alignment:
Q  124 tattaagaataatgatataggtagttaggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcat 223  Q
    ||||||||||||| |||||| ||||||| | | |||||||||||||| |||||| | ||||||| || |||||||| ||||| | | ||| ||||||| |    
T  369263 tattaagaataataatatagttagttagaatagtagtttagttactaaataagtcatatggttggctaatttgtaccgatctcttttatttttgtatctt 369362  T
Q  224 ttcaagtatcatcaatacaatagttttccaagcttttctctctatatctatggatgacatgtttc 288  Q
    ||||| ||||||||||||||||||| |  ||| |||||||| ||| |  ||||||| ||||||||    
T  369363 ttcaactatcatcaatacaatagttgt--aagtttttctctttattttcatggatgtcatgtttc 369425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 155 - 294
Target Start/End: Complemental strand, 31909236 - 31909100
Alignment:
Q  155 actagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaatagttttccaa 254  Q
    ||||||||||| ||||||||||| ||| | |||||||||||||||   ||| | ||||| ||||||| |||||| ||||||||||||||||| |||  ||    
T  31909236 actagtttagtcactatataagtcacaag-ttgactcatttgtacctctctctttcatt-ttgtatcttttcaactatcatcaatacaatagctttgtaa 31909139  T
Q  255 gcttttctctctatatctatggatgacatgtttcctaaca 294  Q
    |||||||||||||| |  ||||||| ||||||||||||||    
T  31909138 gcttttctctctattttcatggatg-catgtttcctaaca 31909100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 4676130 - 4676201
Alignment:
Q  124 tattaagaataatgatataggtagttaggacactagtttagttactatataagttacatggttgactcattt 195  Q
    |||||||||||||||||||| |||||||   ||||||||||||||||||||||| ||| |||||||||||||    
T  4676130 tattaagaataatgatatagttagttagagtactagtttagttactatataagtcacagggttgactcattt 4676201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 4678075 - 4678146
Alignment:
Q  124 tattaagaataatgatataggtagttaggacactagtttagttactatataagttacatggttgactcattt 195  Q
    |||||||||||||||||||| |||||||   ||||||||||||||||||||||| ||| |||||||||||||    
T  4678075 tattaagaataatgatatagttagttagagtactagtttagttactatataagtcacaaggttgactcattt 4678146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 281 - 349
Target Start/End: Original strand, 4676285 - 4676354
Alignment:
Q  281 catgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggata-ttttccgctgcattttc 349  Q
    |||||||||||| ||||||||||||| ||  ||||||||||||||||||||| |||||||||||||||||    
T  4676285 catgtttcctaatatggtatcagagctaacctggtatccaccttgaaggatatttttccgctgcattttc 4676354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 285 - 349
Target Start/End: Original strand, 39327 - 39391
Alignment:
Q  285 tttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 349  Q
    |||| ||||||| ||||||||| |||  | |||||||||||||||||||||||||||||||||||    
T  39327 tttcttaacatgatatcagagctaatccgatatccaccttgaaggatattttccgctgcattttc 39391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 281 - 327
Target Start/End: Original strand, 26174391 - 26174437
Alignment:
Q  281 catgtttcctaacatggtatcagagcaaatatggtatccaccttgaa 327  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||    
T  26174391 catgtttactaacatggtatcagaacaaatatggtatccaccttgaa 26174437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 7277762 - 7277695
Alignment:
Q  281 catgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 349  Q
    |||||||||||||||||||||||||||    ||||||||||||||||  || |||||||||||||||||    
T  7277762 catgtttcctaacatggtatcagagcatgattggtatccaccttgaacaat-ttttccgctgcattttc 7277695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 268
Target Start/End: Complemental strand, 3785937 - 3785816
Alignment:
Q  145 tagttaggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaat 244  Q
    ||||||||  |||| | |||| ||||||||||| ||| | |||||||||||||| | | |||| | |||||||||||||||||| ||| |||||||||||    
T  3785937 tagttagggtactactatagtcactatataagtcacaag-ttgactcatttgta-tca-cttttttattcttgtatcatttcaactattatcaatacaat 3785841  T
Q  245 agttttccaagctt-ttctctctat 268  Q
    | ||| | |||||| ||||||||||    
T  3785840 aatttcctaagcttcttctctctat 3785816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 306
Target Start/End: Complemental strand, 19472563 - 19472471
Alignment:
Q  215 ttgtatcatttcaagtatcatcaatacaatagttttccaagctttt-ctctctatatctatggatgacatgtttcctaacatggtatcagagc 306  Q
    |||||||||||||| |||  |||||| |||| |||   |||||||| |||||||| |  ||||||| ||||||||  ||||||||||||||||    
T  19472563 ttgtatcatttcaactattttcaatataataatttcttaagctttttctctctattttcatggatgccatgtttctcaacatggtatcagagc 19472471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 306
Target Start/End: Complemental strand, 19543488 - 19543396
Alignment:
Q  215 ttgtatcatttcaagtatcatcaatacaatagttttccaagctttt-ctctctatatctatggatgacatgtttcctaacatggtatcagagc 306  Q
    |||||||||||||| |||  |||||| |||| |||   |||||||| |||||||| |  ||||||| ||||||||  ||||||||||||||||    
T  19543488 ttgtatcatttcaactattttcaatataataatttcttaagctttttctctctattttcatggatgccatgtttctcaacatggtatcagagc 19543396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 306
Target Start/End: Original strand, 19589208 - 19589300
Alignment:
Q  215 ttgtatcatttcaagtatcatcaatacaatagttttccaagctttt-ctctctatatctatggatgacatgtttcctaacatggtatcagagc 306  Q
    |||||||||||||| |||  |||||| |||| |||   |||||||| |||||||| |  ||||||| ||||||||  ||||||||||||||||    
T  19589208 ttgtatcatttcaactattttcaatataataatttcttaagctttttctctctattttcatggatgccatgtttctcaacatggtatcagagc 19589300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 124 - 294
Target Start/End: Complemental strand, 26608177 - 26608008
Alignment:
Q  124 tattaagaataatgatataggtagttaggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatca- 222  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||||||||||||| ||| ||||||||||| |||||  |||||| ||||||||||||||     
T  26608177 tattaagaataatgatatagttagttaggatactagttcagttactatataagtcacaaggttgactcatctgtacctatctttttcattcttgtatcat 26608078  T
Q  223 tttcaagtatcatcaatacaatagttttccaagcttttctctctatatctatggatgacatgtttcctaaca 294  Q
    |||||| ||||||||||||||||  |||| |||||||||||||||| |  ||||||| |||||||| |||||    
T  26608077 tttcaactatcatcaatacaata--tttctaagcttttctctctattttcatggatgtcatgtttcttaaca 26608008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 273 - 349
Target Start/End: Original strand, 24038380 - 24038456
Alignment:
Q  273 atggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 349  Q
    ||||||| ||||||| ||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||    
T  24038380 atggatgccatgttttctaacatggtatcagagcctggttggtatccaccttgaaggatattttccgctgcattttc 24038456  T

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Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 124 - 265
Target Start/End: Complemental strand, 27172995 - 27172855
Alignment:
Q  124 tattaagaataatgatataggtagttaggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcat 223  Q
    ||||||||||||||||||||  |||||||| ||||||||||||||||||||||| |  | | |||||||||||||   ||||||  ||||||||||||||    
T  27172995 tattaagaataatgatatagtaagttaggatactagtttagttactatataagtca-ttaggtgactcatttgtaactatcttttccattcttgtatcat 27172897  T
Q  224 ttcaagtatcatcaatacaatagttttccaagcttttctctc 265  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  27172896 ttcaactatcatcaatagaatagttttccaagcttttctctc 27172855  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 281 - 348
Target Start/End: Complemental strand, 35309160 - 35309093
Alignment:
Q  281 catgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcatttt 348  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  35309160 catgtttcctaacatggtatcagagctaatctggtatccaccttgaaggatattttccgctgcatttt 35309093  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 273 - 349
Target Start/End: Complemental strand, 41951752 - 41951676
Alignment:
Q  273 atggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 349  Q
    ||||||| |||||||||||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||||||||    
T  41951752 atggatgccatgtttcctaacatggtattagagctaatctggtatccgccttgaaggatattttccgctgcattttc 41951676  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 39040707 - 39040636
Alignment:
Q  124 tattaagaataatgatataggtagttaggacactagtttagttactatataagttacatggttgactcattt 195  Q
    |||||||||||||||||||| |||||||   ||||||||||||||||||||||| ||| |||||||||||||    
T  39040707 tattaagaataatgatatagttagttagagtactagtttagttactatataagtcacaaggttgactcattt 39040636  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 30518698 - 30518630
Alignment:
Q  281 catgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 349  Q
    |||||||  ||||||||||| ||||| ||| ||||||||||||| || |||||||||||||||||||||    
T  30518698 catgttttataacatggtataagagctaatctggtatccaccttaaaagatattttccgctgcattttc 30518630  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 30559038 - 30558970
Alignment:
Q  281 catgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 349  Q
    |||||||  ||||||||||| ||||| ||| ||||||||||||| || |||||||||||||||||||||    
T  30559038 catgttttataacatggtataagagctaatctggtatccaccttaaaagatattttccgctgcattttc 30558970  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 349
Target Start/End: Original strand, 21254265 - 21254340
Alignment:
Q  273 atggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 349  Q
    ||||||| |||||||||||||||||||||| ||||    ||||||||||||||||  || |||||||||||||||||    
T  21254265 atggatgccatgtttcctaacatggtatcatagcatgattggtatccaccttgaacaat-ttttccgctgcattttc 21254340  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 306
Target Start/End: Complemental strand, 26873182 - 26873149
Alignment:
Q  273 atggatgacatgtttcctaacatggtatcagagc 306  Q
    ||||||| ||||||||||||||||||||||||||    
T  26873182 atggatgccatgtttcctaacatggtatcagagc 26873149  T

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Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 273 - 349
Target Start/End: Original strand, 41830317 - 41830393
Alignment:
Q  273 atggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 349  Q
    |||||||||||||||||||||||||||| ||||| ||  ||||||||||||||||||||||||||||||||||||||    
T  41830317 atggatgacatgtttcctaacatggtattagagctaacttggtatccaccttgaaggatattttccgctgcattttc 41830393  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 281 - 349
Target Start/End: Original strand, 34510821 - 34510888
Alignment:
Q  281 catgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 349  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||    
T  34510821 catgtttcctaacatggtatcagagctaatctggtatccaccttgaagga-attttccgctgcattttc 34510888  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 145 - 288
Target Start/End: Original strand, 2577001 - 2577142
Alignment:
Q  145 tagttaggacactagtttagttactatataagttacatggttgactcatttgtactgatctttctcattcttgtatcatttcaagtatcatcaatacaat 244  Q
    ||||||||  |||||| |||| ||||||||||| ||| | |||||||||||||| | | |||| |||||||||||||||||||| ||| |||||||||||    
T  2577001 tagttagggtactagtatagtcactatataagtcacaag-ttgactcatttgta-tca-ctttttcattcttgtatcatttcaactattatcaatacaat 2577097  T
Q  245 agttttccaagctt-ttctctctatatctatggatgacatgtttc 288  Q
    | ||||| |||||| |||||||||| |  ||||||| ||||||||    
T  2577098 aattttctaagcttcttctctctattttcatggatgccatgtttc 2577142  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 281 - 348
Target Start/End: Complemental strand, 36647500 - 36647433
Alignment:
Q  281 catgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcatttt 348  Q
    ||||||| |||| ||||||||||||| ||| |||||| || |||||||||||||||||||||||||||    
T  36647500 catgttttctaatatggtatcagagctaatctggtattcatcttgaaggatattttccgctgcatttt 36647433  T

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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 349
Target Start/End: Complemental strand, 146744 - 146666
Alignment:
Q  270 tctatggatgacatgtttcctaacatggtatcagagcaaatatggtatccaccttgaaggatattttccgctgcattttc 349  Q
    ||||| |||| |||||||||||||||||||||| ||||    ||||||||||||||||  || |||||||||||||||||    
T  146744 tctatagatgccatgtttcctaacatggtatcaaagcatgattggtatccaccttgaacaat-ttttccgctgcattttc 146666  T

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