View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8063_low_4 (Length: 554)
Name: NF8063_low_4
Description: NF8063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8063_low_4 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 493; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 10 - 554
Target Start/End: Original strand, 23597709 - 23598258
Alignment:
| Q |
10 |
gatggacatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtgttg |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
23597709 |
gatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtgctg |
23597808 |
T |
|
| Q |
110 |
gtggtgatgctggaggagccatggatgaggatggacctgctgctggcagtggaagtggtgctggccccaaaattgaggaagttgattaagcggaactttt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23597809 |
gtggtgatgctggaggagccatggatgaggatggacctgctgctggcagtggaagtggtgctggccccaaaattgaggaagttgattaagcggaactttt |
23597908 |
T |
|
| Q |
210 |
gtaatggaatttatgtgtggttcaggattttgcaaggactcttttgaaatagcatcctagtaatatgtatgtgttttggtttaagtagtacagcgagctc |
309 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23597909 |
gtaatgggatttatgtgtggttcaggattttgcaaggactcttttgaaatagcatcctagtaatatgtatgtgttttggtttagctagtacagcgagctc |
23598008 |
T |
|
| Q |
310 |
tatcttatttcaatgtacttttccc----tttaatgttaacaatggtttatgttcctgttcttcatttttcttgttttgacttttgataaattgatcatg |
405 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23598009 |
tgtcttatttcaatgtacttttccctttatttaatgttaacaatggtttaagttcctgttcttcatttttcttgttttgacttttgataaattgatcatg |
23598108 |
T |
|
| Q |
406 |
gattcaaattcgtg-tttatctttctaagttgggtagtttttgttaggattataatcggttaagaaatttgaagtgaatagacttcttcaattttggttt |
504 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23598109 |
gattcaaattcgtgttttatctttctaagttgggtagtttttgttaggattataatcagttaagaaatttgaagtgaatagacttcttcaattttggttt |
23598208 |
T |
|
| Q |
505 |
tggtttggcttttaaaactgtagcaggttggtgttcgagggcatactaga |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23598209 |
tggtttggcttttaaaactgtagcaggttggtgttcgagggcatactaga |
23598258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 23588857 - 23589087
Alignment:
| Q |
10 |
gatggacatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtgttg |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
23588857 |
gatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatttgcaaccctatcattgcaaggatgtatcaaggtgctg |
23588956 |
T |
|
| Q |
110 |
gtggtgatgctggaggagccatggatgaggatggacctgctgctggcagtggaagtggtgctggccccaaaattgaggaagttgattaagcggaactttt |
209 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23588957 |
gtggagatgctggaggagccatggatgaggatggtcctacagctggcagtggaagcggtgctggccccaaaattgaggaagttgattaagctaaactttg |
23589056 |
T |
|
| Q |
210 |
gtaatggaatttatgtgtggttcaggatttt |
240 |
Q |
| |
|
| |||| ||| ||| |||||||| |||||| |
|
|
| T |
23589057 |
ttcatgggattgatgggtggttcatgatttt |
23589087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 536
Target Start/End: Original strand, 23598290 - 23598328
Alignment:
| Q |
498 |
ttggttttggtttggcttttaaaactgtagcaggttggt |
536 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
23598290 |
ttggttttggtttggcttttgaaactgtatcaggttggt |
23598328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 39984678 - 39984594
Alignment:
| Q |
22 |
cttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
106 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||| || || ||| | ||||||||||||||||| | |||||| ||||||| |
|
|
| T |
39984678 |
cttgcagaggctgatgagtttgaggacaagatgaaggaacttgaaggtgtctgcaaccctatcattgccaagatgtaccaaggtg |
39984594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 8018554 - 8018633
Alignment:
| Q |
27 |
agaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
106 |
Q |
| |
|
|||||||||||| ||||| || ||||||||||| || ||| | |||||||||| |||||||| | |||||||||||||| |
|
|
| T |
8018554 |
agaggctgatgagtttgaagataagatgaaggaacttgagagcctttgcaacccaatcattgccaagatgtatcaaggtg |
8018633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 8101687 - 8101615
Alignment:
| Q |
34 |
gatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
106 |
Q |
| |
|
||||| ||||| ||||||||||||||||| ||| || || ||||| |||||||||| |||||| ||||||| |
|
|
| T |
8101687 |
gatgagtttgaagacaagatgaaggagcttgagacaatctgtaacccaatcattgcaaagatgtaccaaggtg |
8101615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 17706804 - 17706893
Alignment:
| Q |
17 |
atcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaaccctatcattgcaaggatgtatcaaggtg |
106 |
Q |
| |
|
|||| |||| |||||| ||||| |||||||||||||||||||| | || ||| | ||||||||||||||||| | |||||| ||||||| |
|
|
| T |
17706804 |
atcagcttgcagaggcagatgagtttgaggacaagatgaaggaaccagaaggtgtctgcaaccctatcattgccaagatgtaccaaggtg |
17706893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University