View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8063_low_5 (Length: 488)
Name: NF8063_low_5
Description: NF8063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8063_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 32518415 - 32518763
Alignment:
| Q |
1 |
tgttcttatatcttggtattccatcgctgtcaggtcgttgctgcagagaaaaagaagtttcagtccaactttgagattcagaaatatacacaactgaaag |
100 |
Q |
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| T |
32518415 |
tgttcttatatcttggtattccatcgctgtcaggtcgttgctgcagagaaaaagaagtttcagtccaactttgagattcagaaatatacacaactgaaag |
32518514 |
T |
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| Q |
101 |
ataagcactatgtagtatccttatccttgtatgttgtaaccacactctggtacctgcaaacgagtccgtataacctgaaaaaagagggacgaagaaacaa |
200 |
Q |
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| T |
32518515 |
ataagcactatgtagtatccttatccttgtatgttgtaaccacactctggtacctgcaaacgagtccgtataacctgaaaaaagagggacggagaaacaa |
32518614 |
T |
|
| Q |
201 |
catgccacatgagaaagcaagttcttctatgattgatgttaaaggactcactagaatccaaatttttctccttcaaaagacaaggggggagagttgtaga |
300 |
Q |
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| T |
32518615 |
catgccacatgagaaagcaagttcttctatgattgatgttaaaggactcactagaatccaaatttttctccttcaaaagacaaggggggagagttgtaca |
32518714 |
T |
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| Q |
301 |
tgaaatggatggattggtagtgttgcagcaacggttgttattgctccaa |
349 |
Q |
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| T |
32518715 |
tgaaatggatggattggtagtgttgcagcaacggttgttattgctccaa |
32518763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 137 - 479
Target Start/End: Original strand, 32529407 - 32529756
Alignment:
| Q |
137 |
taaccacactctggtacctgcaaacgagtccgtataacctgaaaaaagagggacg---aagaaacaacatgccacatgagaaagcaagttcttctatgat |
233 |
Q |
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| T |
32529407 |
taaccacactctggtacctgcaaacgagtccgtataacctgaaaaa-gaaggatggaaaaaaaacagcatgccacatgagaaagcaacttcttctatgat |
32529505 |
T |
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| Q |
234 |
tgat-------gttaaaggactcactagaatccaaatttttctccttcaaaagacaaggggg-gagagttgtagatgaaatggatggattggtagtgttg |
325 |
Q |
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| T |
32529506 |
tgatatattatgttcagggac--actagaatccaaatttt-ctctgtcaaaatacaagggggagagagttgtacatgaattggatggagtgagagtaatg |
32529602 |
T |
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| Q |
326 |
cagcaacggttgttattgctccaagagcaacataatgaaccgaattctgaggaaaggaataaaacatcaaaacatttcataggtaaatcatggaaaatac |
425 |
Q |
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||||||| ||| | ||||||||||| || |||||| ||| || |||||||||||| ||||||| ||||||||||| |||| |||||| ||||||| ||| |
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| T |
32529603 |
cagcaacttttgatgttgctccaagaacagcataatcaacagatttctgaggaaagaaataaaatatcaaaacattacatatgtaaattatggaaagtac |
32529702 |
T |
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| Q |
426 |
cttcaggacttggatacaacattcaaatgaaaatatttgtaagaataatatagc |
479 |
Q |
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| T |
32529703 |
cttgagagcttgaatataacatgcaaaagaaaacatttgtaagcataaaatagc |
32529756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 32524807 - 32524899
Alignment:
| Q |
1 |
tgttcttatatcttggtattccatcgctgtcaggtcgttgctgcagagaaaaagaagtttcagtccaactttgagattcagaaatatacacaa |
93 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||| |
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| T |
32524807 |
tgttcttatatcttggtattccatcgctgtcaggtcgttgctgcagagaaaaagaagtttcagtcaagctttgagattcagaaagttacacaa |
32524899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 138 - 401
Target Start/End: Original strand, 32543905 - 32544172
Alignment:
| Q |
138 |
aaccacactctggtacctgcaaacgagtccgtataacctgaaaaaagagggacgaagaaacaacatgccacatgagaaagcaagttcttctatgattgat |
237 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| | |||| | ||| || ||||| |||||||||||| ||||| || ||||||| |
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| T |
32543905 |
aaccacactctggtacctgcaaacgagaccgtataacctgaaaga-gaggaaaaaagg--cagtatgccgtatgagaaagcaacttcttttaggattgat |
32544001 |
T |
|
| Q |
238 |
gt-------taaaggactcactagaatccaaatttttctccttcaaaagacaaggggggagagtt--gtagatgaaatggatggattggtagtgttgcag |
328 |
Q |
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|| | |||||| | |||| ||||||| |||||||||||||||||||||||| |||| | ||| |||||||||| | || | ||| |||||| |
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| T |
32544002 |
gtattatgttcaaggac--agtagagtccaaatctttctccttcaaaagacaagggggcagagattcgtacctgaaatggataggttaggagtattgcag |
32544099 |
T |
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| Q |
329 |
caacggttgttattgctccaagagcaacataatgaaccgaattctgaggaaaggaataaaacatcaaaacatt |
401 |
Q |
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| T |
32544100 |
caacttttgatgttgctccaagaacagcataatcaacagaattctggggaaacgaataaaatatcaaaacatt |
32544172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 442 - 479
Target Start/End: Original strand, 32518761 - 32518798
Alignment:
| Q |
442 |
caacattcaaatgaaaatatttgtaagaataatatagc |
479 |
Q |
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| T |
32518761 |
caacattcaaatgaaaatatttgtaagcataatatagc |
32518798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 32543811 - 32543844
Alignment:
| Q |
31 |
caggtcgttgctgcagagaaaaagaagtttcagt |
64 |
Q |
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| T |
32543811 |
caggtcgttgctgcagagagaaagaagtttcagt |
32543844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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