View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8063_low_7 (Length: 362)
Name: NF8063_low_7
Description: NF8063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8063_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 343
Target Start/End: Original strand, 2946641 - 2946973
Alignment:
| Q |
11 |
tcgaagaatattccctcctttgatgggtcgccacctgaaatattcagacgttaaagagactactccgcattctaaattaaattcaagcgttaaagaaggt |
110 |
Q |
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| T |
2946641 |
tcgaacaatattccctcctttgatgggtcgccacctgaaatattcagacgttaaagagactactccgcattctaaattaaattcaagcgttaaagaaggt |
2946740 |
T |
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| Q |
111 |
acattgtttcagtttaaagtctctttccatgcatgacattgcttattacctatactttgttaccaagcaatgaagaaaaactgccatctgaaccttagca |
210 |
Q |
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| T |
2946741 |
acgttgtttcagtttaaagtctctttccatgcatgacattgcttattacctatactttgttaccaagcaatgaagaaaaactgccatctgaaccttagca |
2946840 |
T |
|
| Q |
211 |
aattctgtcccaacacaaaatctcatgcctccaccaaaagccaggaaatgtttggtagcaccactcggttccattccctgtagaccatttctttttggat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2946841 |
aattctgtcccaacacaaaatctcatgcctccaccaaaagccaggaaatgtttggtagcaccactcggttccattccctgtagaccatttctttttggat |
2946940 |
T |
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| Q |
311 |
cacaaaattgtaaaagaatggacatgatagact |
343 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2946941 |
cacaaaattgtaaaagaatggacatgatagact |
2946973 |
T |
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