View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8063_low_8 (Length: 350)

Name: NF8063_low_8
Description: NF8063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8063_low_8
NF8063_low_8
[»] chr4 (1 HSPs)
chr4 (19-323)||(23800953-23801251)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 23800953 - 23801251
Alignment:
Q  19 gtgttatgctcatggcagacaagatttatgggttcgattgggttccattcttggtaataagagagagctgaattgnnnnnnnnnnnnnnngtgattttta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||               ||||||||||    
T  23800953 gtgttatgctcatggcagacaagatttatgggttcgattgggttccattcttggtaacaagagagagctgaattggtgtgtgtg------gtgattttta 23801046  T
Q  119 tgttgttaggtcttacactaagcggaagagtattgttattggcccaagttatgaagaggagattgttcttctatgagctttacttggtttagaggagatt 218  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23801047 tgttgttaggtcttacactaagcggaagagtagtgttattggcccaagttatgaagaggagattgttcttctgtgagctttacttggtttagaggagatt 23801146  T
Q  219 gttcttctatgagtcgtcttgacatatttcttctcacaaaggaatggtgtgttcggtggcctcacatgattcaacaagctttaatgcgcggcctttcatc 318  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||     
T  23801147 gttcttctatgagtcgtcttgacagatttcttctctcaaaggaatggtgtgttcggtggcctcacatgattcaacaagctttatttcgcggcctttcata 23801246  T

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