View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8064_high_4 (Length: 360)
Name: NF8064_high_4
Description: NF8064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8064_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 21440740 - 21440967
Alignment:
| Q |
1 |
ttcacaacacaacaaattgcatgaactctcatgttgattccattaacatactcgatcacacaaacaaacnnnnnnnntcaaccggtaaagatcctatgta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
21440740 |
ttcacaacacaacaaattgcatgaactctcatgttgattccattaacatactcaatcacaaaaacaaacaaaaaaaatcaaccggtaaagatcctatgta |
21440839 |
T |
|
| Q |
101 |
gttcctgaatgtgtccagcaatactgtcgctttagtttttgaattaatcaaaattacaatgaacattctcaaatttgtcactccttagtcacacatttac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
21440840 |
gttcctgaatgtgtccagcaatactgtcgctttagtttttgaattaatcaaaattacaatgaacattctcaaatgtgtctctccttagtcacacatttac |
21440939 |
T |
|
| Q |
201 |
ataccaaaatgactgtttattctaaata |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
21440940 |
ataccaaaatgactgtttattctaaata |
21440967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 220 - 350
Target Start/End: Original strand, 21441352 - 21441482
Alignment:
| Q |
220 |
ttctaaataaaacataaaaaattcaaattttcaaatacaaattatatgaagaatgcacaaatttaagaaattcattctcgttcaacgtaagagacacata |
319 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21441352 |
ttctaaataaaacataaaaaattcgaattttcagatacaaattataggaataatgcacaaatttaagaaattcattctcgttcagcgtaagagacacata |
21441451 |
T |
|
| Q |
320 |
cactatgaaacattgacacatacacgaacac |
350 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |
|
|
| T |
21441452 |
cactatgaaacattgacacattcacgaacac |
21441482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 87 - 328
Target Start/End: Original strand, 21440138 - 21440383
Alignment:
| Q |
87 |
aaagatcctatgtagttcctgaatgtgtccagcaatactgtcgctttagtttttgaattaatcaaaattacaatgaacattctcaaatttgtcactcctt |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||| || |||| || ||||||||||||||| | |||||||||| |||| ||| || |
|
|
| T |
21440138 |
aaagatcctatgtagttcctgaatgtgtccggcactactgtcactatagtattcaaattaatcaaaatta-----ataattctcaaatgtgtctctcatt |
21440232 |
T |
|
| Q |
187 |
agtcacacatttacataccaaaatgactgtttattctaaataaaacataaaaa------attcaaattttcaaatacaaattat---atgaagaatgcac |
277 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||| ||| | ||||| | | |||| || | ||||| |||| | ||||||||||| |
|
|
| T |
21440233 |
tgtcacacatttacatgccaaaatgattgtttattctaaattaaaaaaaaaaactaaagaatttaattctccattacaagttataaaaagaagaatgcac |
21440332 |
T |
|
| Q |
278 |
aaatttaagaaattcattctcgttcaacgtaagagacacatacactatgaa |
328 |
Q |
| |
|
|| ||||||||||||||||| | || | ||||| |||||||||||||||| |
|
|
| T |
21440333 |
aactttaagaaattcattctattacagcttaagatacacatacactatgaa |
21440383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 21440073 - 21440122
Alignment:
| Q |
4 |
acaacacaacaaattgcatgaactctcatgttgattccattaacatactc |
53 |
Q |
| |
|
||||| |||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
21440073 |
acaacgcaacaaattgcatgaactctaatgctgattccattaacatactc |
21440122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University