View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8064_low_1 (Length: 548)
Name: NF8064_low_1
Description: NF8064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8064_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 5e-82; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 3685548 - 3685304
Alignment:
| Q |
17 |
agttacataaactgttgctagaattaatcatgatatgaggaccaagtgtaaccgagtgagaggagaagaagaatgcagtggttgaaagaggtattccata |
116 |
Q |
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| T |
3685548 |
agttacataaactgttgctacaattaatcatgatatgaggaccaagtgtaaccgagtgagaggagaagaagaatgcagtggttgaaagaggtgttccata |
3685449 |
T |
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| Q |
117 |
tataaaagtcccacattgaaggttcaatgaagcattacaacacatggtgcatatnnnnnnngctgcgaacttgttgtaaggcataaatctatgttctcca |
216 |
Q |
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| T |
3685448 |
tatagaagtcccacatcgaaggttcaatgaagcattacaacacatggtgcatataaaacgagctacgagcttgttgtaagtcatatatttatgttctcca |
3685349 |
T |
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| Q |
217 |
ttg-aagnnnnnnntggtatacgatagatttactttatgtaactc |
260 |
Q |
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| T |
3685348 |
ttgaaaaataaaaatggtatacgatagatttactttatgtaactc |
3685304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 3693229 - 3693071
Alignment:
| Q |
17 |
agttacataaactgttgctagaattaatca-tgatatgaggaccaagtgtaaccgagtgagaggagaagaagaatgca----gtggttgaaagaggtatt |
111 |
Q |
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| T |
3693229 |
agttacataaactgttgctacaattaatcaatgatatgaggacgaagtgtgaccgagtgagaggagaagaagaatggaaggagtggttgaaagaggtatt |
3693130 |
T |
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| Q |
112 |
ccatatataaaagtcccacattgaaggttcaatgaagcattacaacacatggtgcatat |
170 |
Q |
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| T |
3693129 |
tcatatatatgaatcccacatcaaaggttcaatgaagcatcacaacacatggtgcatat |
3693071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 3679011 - 3678934
Alignment:
| Q |
93 |
agtggttgaaagaggtattccatatataaaagtcccacattgaaggttcaatgaagcattacaacacatggtgcatat |
170 |
Q |
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| T |
3679011 |
agtggttgaaagaggtatttcatatatagaagtcccacatcgaaggttcagtgaagcattacagcacatggtgcatat |
3678934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 3694942 - 3694863
Alignment:
| Q |
91 |
gcagtggttgaaagaggtattccatatataaaagtcccacattgaaggttcaatgaagcattacaacacatggtgcatat |
170 |
Q |
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| T |
3694942 |
gcagtggttgaaagagttatttcatatatagaagtcccacatcgaaggttcaatgaagcatcacaacacatgttgcatat |
3694863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 3674817 - 3674740
Alignment:
| Q |
93 |
agtggttgaaagaggtattccatatataaaagtcccacattgaaggttcaatgaagcattacaacacatggtgcatat |
170 |
Q |
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| T |
3674817 |
agtggttgaaagaggtatttcatatatagaagtcccacatcgaaggttgaataaagcatcacaacacatggtgcatat |
3674740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 3654258 - 3654333
Alignment:
| Q |
95 |
tggttgaaagaggtattccatatataaaagtcccacattgaaggttcaatgaagcattacaacacatggtgcatat |
170 |
Q |
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| T |
3654258 |
tggttgaaagaggtatttcatatatatgaatcccacatcgaaggttcattgaagcatcacaacacatggtgcatat |
3654333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 3703005 - 3702931
Alignment:
| Q |
17 |
agttacataaactgttgctagaattaatcatgatatgaggaccaagtgtaaccgagtgagaggagaagaagaatg |
91 |
Q |
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| T |
3703005 |
agttacataaactgttgccacaattaatcatgatatgaggaccaagagtgactgagtgagacgagaagaacaatg |
3702931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 3705936 - 3705782
Alignment:
| Q |
17 |
agttacataaactgttgctagaattaatcatgatatgaggaccaagtgtaaccgagtgagaggagaagaagaat----gcagtggttgaaagaggtattc |
112 |
Q |
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| T |
3705936 |
agttacataaactgttgctacaattaataatgataagaggaccaagaatgactgagtgagaggagaagaacaatggaagcagtggttgaaatagctactt |
3705837 |
T |
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| Q |
113 |
catatataaaagtcccacattgaaggttcaatgaagcattacaacacatggtgcat |
168 |
Q |
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| T |
3705836 |
catagatgggagtcccacatcgaaggtt-gatgaaccatcacaacacatgatgcat |
3705782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 3651582 - 3651681
Alignment:
| Q |
75 |
agaggagaagaagaatg----cagtggttgaaagaggtattccatatataaaagtcccacattgaaggttcaatgaagcattacaacacatggtgcatat |
170 |
Q |
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| T |
3651582 |
agaggagaagaagaatggaagcaggggttgaaagaactatttcatatataggagtcccatattgaagtttcaatgaagcaccacaacacatgctgcatat |
3651681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 3694997 - 3694957
Alignment:
| Q |
17 |
agttacataaactgttgctagaattaatcatgatatgagga |
57 |
Q |
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| T |
3694997 |
agttacataaactgttgctacaattaatcatgatatgagga |
3694957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 3683976 - 3683901
Alignment:
| Q |
91 |
gcagtggttgaaagaggtattccatatataaaagtcccacattgaaggttcaatgaagcattacaacacatggtgcatat |
170 |
Q |
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| T |
3683976 |
gcagtggttgaaagaggtatttcatatt----agccccacatcgaaggttcaatgaagcatcacagctcatggtgcatat |
3683901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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