View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8064_low_3 (Length: 441)
Name: NF8064_low_3
Description: NF8064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8064_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 196 - 425
Target Start/End: Complemental strand, 29714057 - 29713834
Alignment:
| Q |
196 |
tttctaggaaaaaacaaataataatagtaataataatcacaagaaggaaaggaaagacaattaacaacaacattgtattgatttgattcatgtatctctc |
295 |
Q |
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| T |
29714057 |
tttctaggaaaaaacaaataataata------ataatcacaagaaggaaaggaaagacaattaacaacaacattgtattgatttgattcatgtatctctc |
29713964 |
T |
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| Q |
296 |
acaaactatgttcttagacatattttagtcactcgtgtcgtctcatgaatcaaagtagagaagtggggtatgttcaccttttgaatgttagtagaaaaac |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29713963 |
acaaactatgttcttagacatattttagtcactcgtgtcgtctcatgaatcaaagtagagaagtggggtatgttcaccttttgaatgttagtagaaaaac |
29713864 |
T |
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| Q |
396 |
ttttcttagaaaaatcggtgtgcttaattt |
425 |
Q |
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||||||||||||| |||||||||||||||| |
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| T |
29713863 |
ttttcttagaaaagtcggtgtgcttaattt |
29713834 |
T |
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