View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8064_low_4 (Length: 406)
Name: NF8064_low_4
Description: NF8064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8064_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 37534297 - 37533909
Alignment:
| Q |
1 |
tgatcatatgtcagaatttatctatcccaaaagctcaaaatagcttctacacaaaactaagatatatcataaaaacacttccttccaaatattaaccaaa |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37534297 |
tgatcatatgtcacaatttatctatcccaaaagctcaaaatagcttctacacaaaactaagatatatcataaaaacacttccttccaaatattaaccaaa |
37534198 |
T |
|
| Q |
101 |
tgcatccaaagttgaaacattaaaaattgcattcttttttggagaacaagttcagcaataaattggaatgtatatannnnnnnaagaaagaataacccaa |
200 |
Q |
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| T |
37534197 |
tgcatccaaagttgaaacattaaaaattgcattcttttttggagaaaaagttcagcaataaattggaat--atatatttttttaagaaagaataacccaa |
37534100 |
T |
|
| Q |
201 |
tacaccagggccctactattcggagtatgctaggatcaaatgtatgcaactacacagcctcgctcttgtgaattgagacgctatgtgtttctatagcaaa |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37534099 |
tacaccagggccctactattaggagtatgctaggatcaaatgtatgcaactacacagcctcgctcttgtgaattgagacgctatgtgtttctatagcaaa |
37534000 |
T |
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| Q |
301 |
atgaatcctcaaagatgattctcgatcacagaatataccaaaaagaaaattaaaaataacacatgggtcaagtattgagtttggaaaaatc |
391 |
Q |
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| T |
37533999 |
atgaatcctcaaagatgattctcgatcacagaatataccaaaaagaaaattaaaaataacacatgggtcaagtattgagtttggaaaaatc |
37533909 |
T |
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