View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8064_low_8 (Length: 281)
Name: NF8064_low_8
Description: NF8064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8064_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 28 - 192
Target Start/End: Original strand, 42387389 - 42387553
Alignment:
| Q |
28 |
atttattgattaatctgcagacctatcacaaatcaacaggtaacaatattctaaagaatttccaatagcatatattagaaagcactaaatgaaattcaaa |
127 |
Q |
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| T |
42387389 |
atttattgattaatctgcagacctatcacaaatcaacaggtaacaatattctaaagaatttccaatagcatatattagaaagcactaaatgaaattcaaa |
42387488 |
T |
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| Q |
128 |
agatgtagaatatgatagcaacagcaaatattccatcagtaaacaagttattaataatctggtct |
192 |
Q |
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| T |
42387489 |
agatgtagaatatgatagcaacagcaaatattccatcagtaaacaagttattaataatctggtct |
42387553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 37 - 192
Target Start/End: Complemental strand, 3190758 - 3190603
Alignment:
| Q |
37 |
ttaatctgcagacctatcacaaatcaacaggtaacaatattctaaagaatttccaatagcatatattagaaagcactaaatgaaattcaaaagatgtaga |
136 |
Q |
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| T |
3190758 |
ttaatctgcagacctatcccaaatcaacaggtaacaatattctaaagaatttccaatagcatatattagaaagcactaaatgaaattcaaaagatgtaga |
3190659 |
T |
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| Q |
137 |
atatgatagcaacagcaaatattccatcagtaaacaagttattaataatctggtct |
192 |
Q |
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| T |
3190658 |
gtatgatagcaacagcaaatattccatcagtaaacaagttattaataatctggtct |
3190603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 1752801 - 1752838
Alignment:
| Q |
2 |
agagagagaatattctcttttgtaagatttattgatta |
39 |
Q |
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| T |
1752801 |
agagagagactattctcttttgtaagatttattgatta |
1752838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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