View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8064_low_9 (Length: 271)
Name: NF8064_low_9
Description: NF8064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8064_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 23262854 - 23263093
Alignment:
| Q |
17 |
caagtttggattcgaattatgaacctcccgcaagagtattagagaccaacattgctttttgaaattgcatctagtgtaggcgcccctctttccattgatg |
116 |
Q |
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| T |
23262854 |
caagtttggattcgaattatgaacctcccgcaagagtattagagaccaacattgctttttgaaattgcatctagtgtggacgcccctctttccattgatg |
23262953 |
T |
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| Q |
117 |
aatccacaaaaaaccgtctacatggccactatgtacgtattttgtttgatatagacctatcgcaaaagcattatataacaaggttttggttgagagggac |
216 |
Q |
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| T |
23262954 |
aatccacaaaaaaccgtctacttggccactatgtacgtattttggttgatatagacctaacccaaaagcat--tataacaaggttttggttgagagggac |
23263051 |
T |
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| Q |
217 |
aattatgccttct---atgtgggaattgtgtttgataaacat |
255 |
Q |
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| T |
23263052 |
aattatgccttctataatgtgggaattgtgtttgataaacat |
23263093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 9880760 - 9880605
Alignment:
| Q |
17 |
caagtttggattcgaattatgaacctcccgcaagagtattagagaccaacattgctttttgaaattgcatctagtgtaggcgccc--ctctttccattga |
114 |
Q |
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||||||||||||| ||||||||||||||| |||||| ||| |||||||||||| |||||||||||| | |||||| | ||| ||| ||||||||||||| |
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| T |
9880760 |
caagtttggattcaaattatgaacctcccccaagagcattggagaccaacatttctttttgaaattacttctagtttgggcacccctctctttccattga |
9880661 |
T |
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| Q |
115 |
tgaatccac-aaaaaaccgtctacatggccactatgtacgtattttgtttgatata |
169 |
Q |
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| T |
9880660 |
tgaatccacaaaaaaaccgtctatttgtccattatgcacgtgttttggttgatata |
9880605 |
T |
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