View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8065_high_1 (Length: 312)

Name: NF8065_high_1
Description: NF8065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8065_high_1
NF8065_high_1
[»] chr4 (1 HSPs)
chr4 (1-296)||(35201075-35201371)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 35201075 - 35201371
Alignment:
Q  1 ttatctgtaaaaggtccatgcaattgtcttatattttttgttcatgttattaagatcttgatactaacaacttgaaagaaaa-gaaaatgctatnnnnnn 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||          
T  35201075 ttatctgtaaaaggtccatgcaattgtcttatattttttgttcatgttattaagatcttgatactaacaacttgaaagaaaaagaaaatgctataaaaaa 35201174  T
Q  100 ncttgacctaagttacattatttttgaattatatactatactaattaaattaaatattagaaaattttgaagtgggattttgccttattacaacatgcct 199  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35201175 acttgacctaagttacattatttttgaattatatactatactaattaaattaaatattagaaaaatttgaagtgggattttgccttattacaacatgcct 35201274  T
Q  200 agggctttgagcaggtcttagggattccctcaatgtatctctctgcacaaaagaatgttacgttggagtatatatgtgggtgtgtgttctttatttt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35201275 agggctttgagcaggtcttagggattccctcaatgtatctctctgcacaaaagaatgttacgttggagtatatatgtgggtgtgtgttctttatttt 35201371  T

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