View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8065_low_2 (Length: 392)
Name: NF8065_low_2
Description: NF8065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8065_low_2 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr7 (3 HSPs) |
| |
|
| [»] scaffold0667 (1 HSPs) |
| | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 20 - 392
Target Start/End: Original strand, 29453082 - 29453454
Alignment:
| Q |
20 |
ggaaagaccttcctagtatgccgtacgctctttcctatcctcgaacagagggggtttttgttgagaattctcttcactggataatgactcggaaacttga |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29453082 |
ggaaagaccttcctagtatgccgtacgctctttcctatcctcgaacagagggggtttttgttgagaattctcttcactggataatgactcggaaacttgg |
29453181 |
T |
|
| Q |
120 |
tcagttgcaatctcgtgtaattgttgcgtttaacctaacacacgagattttcaatgaggttccttttcctgaaataggggaagaagtgaatagtgagagt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29453182 |
tcagttgcaatctcgtgtaattgttgcgtttaacctaacacacgagattttcaatgaggttccttttcctgaaataggtgaagaagtgaatagtgagagt |
29453281 |
T |
|
| Q |
220 |
tttgaaattggtgttgcggttttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgta |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29453282 |
tttgaaattggtgttgcggttttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgta |
29453381 |
T |
|
| Q |
320 |
gagatagctggtgtaaactttttactttggctgaatcatgtttcattttacctttgaaaactttgtggccttt |
392 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29453382 |
gagatagctggtgtgaactttttactttggcggaatcatgtttcattttacctttgaaaactttgtggccttt |
29453454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 20 - 384
Target Start/End: Complemental strand, 29423629 - 29423265
Alignment:
| Q |
20 |
ggaaagaccttcctagtatgccgtacgctctttcctatcctcgaacagagggggtttttgttgagaattctcttcactggataatgactcggaaacttga |
119 |
Q |
| |
|
||||||| ||||||| ||||| ||| |||||| |||| ||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29423629 |
ggaaagaacttcctaccatgccttacactctttactatgctcaaacaatgggggtttttgttgagaattctcttcactggataatgacggagaaacttga |
29423530 |
T |
|
| Q |
120 |
tcagttgcaatctcgtgtaattgttgcgtttaacctaacacacgagattttcaatgaggttccttttcctgaaataggggaagaagtgaatagtgagagt |
219 |
Q |
| |
|
|| |||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
29423529 |
tccgttgaaacctcgtgtaattgttgcgtttaacctaacacatgagattttcaatgaggttccttttcctgaaattggtgaagaagtgaatagtgagagt |
29423430 |
T |
|
| Q |
220 |
tttgaaattggtgttgcggttttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgta |
319 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29423429 |
tttgaaattggtgttgcggttctggaagggtgcctttgtatgactgtgaattatcaaactgttaaaattgatgtttggctgatgaaagaatatggatgta |
29423330 |
T |
|
| Q |
320 |
gagatagctggtgtaaactttttactttggctgaatcatgtttcattttacctttgaaaactttg |
384 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||| ||||| |
|
|
| T |
29423329 |
gagatagctggtgtaaactttttactttggcagaatcgtgtttcaccttacctttgaaagctttg |
29423265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 376
Target Start/End: Original strand, 29443096 - 29443455
Alignment:
| Q |
20 |
ggaaagaccttcctagtatgccgtacgctctttcctatcctcgaa---cagagggggtttttgttgagaattctcttcactggataatgactcggaaact |
116 |
Q |
| |
|
||||||| ||||||| |||||| ||| ||||||||||| |||||| || ||||| ||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
29443096 |
ggaaagaacttcctactatgccttacactctttcctatgctcgaagaacaatgggggattttgttgagaattcccttcactgggtaatgactcggaaact |
29443195 |
T |
|
| Q |
117 |
tgatcagttgcaatctcgtgtaattgttgcgtttaacctaacacacgagattttcaatgaggttccttttcctgaaataggggaagaagtgaatagtgag |
216 |
Q |
| |
|
||||| ||||||| |||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| || ||||||||| |
|
|
| T |
29443196 |
tgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactcgagattttcaatgaggttccttttcctgaaataggtgaagatgttaatagtgag |
29443295 |
T |
|
| Q |
217 |
agttttgaaattggtgttgcggttttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggat |
316 |
Q |
| |
|
|||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29443296 |
agttttcaaattggtatttcggttctggaagggtgtctttgtatgattgtgaattatcaaactgctaaaattgatgtttgggtgatgaaagaatatggat |
29443395 |
T |
|
| Q |
317 |
gtagagatagctggtgtaaactttttactttggctgaatcatgtttcattttacctttga |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
29443396 |
gtagagatagctggtgtaaactttttactttggctgaatcgtgtttcagtttacctttga |
29443455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 32 - 392
Target Start/End: Original strand, 29467570 - 29467930
Alignment:
| Q |
32 |
ctagtatgccgtacgctctttcctatcctcgaacagagggggtttttgttgagaattctcttcactggataatgactcggaaacttgatcagttgcaatc |
131 |
Q |
| |
|
|||||||||||||| |||||| |||||||| ||| || |||||||||||||||||||||||| |||||||||| |||||||||| ||| ||||| |
|
|
| T |
29467570 |
ctagtatgccgtactctctttactatcctcaaaccatggtggtttttgttgagaattctcttcattggataatgaagaagaaacttgatgggttacaatc |
29467669 |
T |
|
| Q |
132 |
tcgtgtaattgttgcgtttaacctaacacacgagattttcaatgaggttccttttcctgaaataggggaagaagtgaatagtgagagttttgaaattggt |
231 |
Q |
| |
|
| || ||||| | ||||||||||||| | ||||||||||||||||||||| ||||||||||||| | ||||| ||| |||||||||| |||||| | |
|
|
| T |
29467670 |
ttgtttaattatcgcgtttaacctaaagcttgagattttcaatgaggttcctcttcctgaaataggttatgaagttaatgttgagagttttaaaattgat |
29467769 |
T |
|
| Q |
232 |
gttgcggttttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggt |
331 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
29467770 |
gttgcggttttgggagggtgtctttagttgattgtgaattatcaaactagtaaaattgatgtttggttgatgaaagaatatggatgtagagatagttggc |
29467869 |
T |
|
| Q |
332 |
gtaaactttttactttggctgaatcatgtttcattttacctttgaaaactttgtggccttt |
392 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||| ||||| ||| || ||||| ||||||| |
|
|
| T |
29467870 |
gtaaactttttactttggttagatcgtgtttcactttacagttggaatctttgaggccttt |
29467930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 32)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 69 - 378
Target Start/End: Complemental strand, 10348103 - 10347791
Alignment:
| Q |
69 |
gggggtttttgttgagaattctcttcactggataatgactcggaaacttgatcagttgcaatctcgtgtaattgttgcgtttaacctaacacacgagatt |
168 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||| |||||||||| ||| || || | ||||||| ||||||||||| |||| || ||| |
|
|
| T |
10348103 |
gggggtttttgttgagaattctattcactggattatgacgaagaaacttgatgggttacatccttctttaattgtcgcgtttaacctcacacttgaaatt |
10348004 |
T |
|
| Q |
169 |
ttcaatgaggttccttttcctga---aataggggaagaagtgaatagtgagagttttgaaattggtgttgcggttttggaagggtgtctttgtatgattg |
265 |
Q |
| |
|
||||||||||||||| ||||||| |||||| |||||||| ||| |||||||||||||| || |||||| ||||||| ||||||||||||||| | || |
|
|
| T |
10348003 |
ttcaatgaggttcctcttcctgatgaaataggtgaagaagttaatggtgagagttttgaagttcatgttgctgttttgggagggtgtctttgtatcactg |
10347904 |
T |
|
| Q |
266 |
tgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcatgtttcat |
365 |
Q |
| |
|
| ||||| || | |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||| || |||||| |
|
|
| T |
10347903 |
tcgattataaagatactaaaattgatgtttgggtcatgaaagaatatggatgtagagatagttggtgtaaactttttactatggctgagtcgtgtttcga |
10347804 |
T |
|
| Q |
366 |
tttacctttgaaa |
378 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10347803 |
tttacctttgaaa |
10347791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 73 - 362
Target Start/End: Complemental strand, 10336149 - 10335866
Alignment:
| Q |
73 |
gtttttgttgagaattctcttcactggataatgactcggaaacttgatcagttgcaatctcgtgtaattgttgcgtttaacctaacacacgagattttca |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| || || |||||| ||||||||| ||| ||| |||||||||| |
|
|
| T |
10336149 |
gtttttgttgagaattctcttcactggataatgactccgaaacttgatgggttacaaccttgtttaattgctgcgtttaatctatcacttgagattttca |
10336050 |
T |
|
| Q |
173 |
atgaggttccttttcctgaaataggggaagaagtgaatagtgagagttttgaaattggtgttgcggttttggaagggtgtctttgtatgattgtgaatta |
272 |
Q |
| |
|
||||||||||| ||||||| ||| | | | || |||||||||| ||||| | |||| ||||||| ||||||||||||| || ||||||||| |
|
|
| T |
10336049 |
atgaggttcctcttcctgat------gaaataattagtaatgagagttttaaaatttctattgctgttttgggagggtgtctttgtttgcctgtgaatta |
10335956 |
T |
|
| Q |
273 |
tcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcatgttt |
362 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| | |||| ||||| |
|
|
| T |
10335955 |
tcaaactactaaaattgatgtttgggtgatgaaagaatatggctgtagagatagttggtgtaaacattttactttggttaaatcgtgttt |
10335866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 145 - 384
Target Start/End: Complemental strand, 10353351 - 10353109
Alignment:
| Q |
145 |
gcgtttaacctaacacacgagattttcaatgaggttccttttcctga---aataggggaagaagtgaatagtgagagttttgaaattggtgttgcggttt |
241 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||| ||||||| ||||| ||||||||| |||||| |||||||| ||||| ||||||| | || |
|
|
| T |
10353351 |
gcgtttaacctaacacttgagactttcaatgaggttcctcttcctgatgaaatagaggaagaagttaatagtaagagttttaaaattcgtgttgctgctt |
10353252 |
T |
|
| Q |
242 |
tggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttt |
341 |
Q |
| |
|
| | |||||||||||||||||||||| ||||| || | |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
10353251 |
taggagggtgtctttgtatgattgtggattataaagatactaaaattgatgtttgggtgatgaaagaatatggatgtagagagagttggtgtaaactttt |
10353152 |
T |
|
| Q |
342 |
tactttggctgaatcatgtttcattttacctttgaaaactttg |
384 |
Q |
| |
|
|||| ||| | |||| | |||| |||||||||| || ||||| |
|
|
| T |
10353151 |
tactgtggttaaatcttctttcgatttacctttgcaatctttg |
10353109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 69 - 348
Target Start/End: Complemental strand, 9274827 - 9274557
Alignment:
| Q |
69 |
gggggtttttgttgagaattctcttcactggataatgactcggaaacttgatcagttgcaatctcgtgtaattgttgcgtttaacctaacacacgagatt |
168 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||| || || ||||| ||| || || || |||||||||||||||||||||||| || ||| |
|
|
| T |
9274827 |
ggggatttttgttgagaattctcttcactgggtaatgactagggaaattgatgagtcacacccttgtttaattgttgcgtttaacctaacacttgatatt |
9274728 |
T |
|
| Q |
169 |
ttcaatgaggttccttttcctgaaataggggaagaagtgaatagtgagagttttgaaattggtgttgcggttttggaagggtgtctttgtatgattgtga |
268 |
Q |
| |
|
||||||| ||||||| |||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| | ||| |
|
|
| T |
9274727 |
ttcaatgtggttcctcttcctgaa---------gaagtcaatagtgagagttttgaaattaatgttgttgttttggaagggtgtctttgtatgactttga |
9274637 |
T |
|
| Q |
269 |
attatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttg |
348 |
Q |
| |
|
|||||| || | | || |||| ||||||||||||||||||||||| | || |||||| ||||||||||||||||||||| |
|
|
| T |
9274636 |
attatcgaaatactgaatttgaagtttgggtgatgaaagaatatggttctacagatagttggtgtaaactttttactttg |
9274557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 69 - 392
Target Start/End: Complemental strand, 9328908 - 9328591
Alignment:
| Q |
69 |
gggggtttttgttgagaattctcttcactggataatgactcggaaacttgatcagttgcaatctcgtgtaattgttgcgtttaacctaacacacgagatt |
168 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||| | || || || | |||||||||||||||||||||||| || ||| |
|
|
| T |
9328908 |
gggggttttggttgagaattctcttcactggataatgactaagaaacttggtggattacatccttctttaattgttgcgtttaacctaacacttgaaatt |
9328809 |
T |
|
| Q |
169 |
ttcaatgaggttccttttcctgaaataggggaagaagtgaatagtgagagttttgaaattggtgttgcggttttggaagggtgtctttgtatgattgtga |
268 |
Q |
| |
|
||||||| ||||||| ||||||| | | | || | || | ||||||||||||||| ||||| ||||||| |||||||||||| |||| | ||| |
|
|
| T |
9328808 |
ttcaatgtggttcctcttcctgatgttg----ataatag--taataagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactttga |
9328715 |
T |
|
| Q |
269 |
attatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcatgtttcatttt |
368 |
Q |
| |
|
||||| ||||| | ||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| ||| | |||| |||||| ||| |
|
|
| T |
9328714 |
attatgaaactactgaaattgatgtttgggtgatgaaacaatatggatatagagatagttggtgtaaactttttactatggttaaatcgtgtttccattt |
9328615 |
T |
|
| Q |
369 |
acctttgaaaactttgtggccttt |
392 |
Q |
| |
|
|||||||||| ||||| ||||||| |
|
|
| T |
9328614 |
acctttgaaatctttgaggccttt |
9328591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 137 - 349
Target Start/End: Complemental strand, 9364878 - 9364663
Alignment:
| Q |
137 |
taattgttgcgtttaacctaacacacgagattttcaatgaggttccttttcctgaaataggggaagaagtgaat---agtgagagttttgaaattggtgt |
233 |
Q |
| |
|
|||| |||||||||||| |||||| |||||||||||||| ||||| ||||||||||||| |||| ||| ||||||||||||||||| | ||| |
|
|
| T |
9364878 |
taatagttgcgtttaacttaacactagagattttcaatgaagttccacttcctgaaataggtgaagttaataatgagagtgagagttttgaaatcgatgt |
9364779 |
T |
|
| Q |
234 |
tgcggttttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgt |
333 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| | |||||| |||||| |
|
|
| T |
9364778 |
tgcggttttgggagggtgtcttagtatgattgtgaattatcaaactactcaaattgatgtttgggtgatgaaagaatatggattaaaagatagttggtgt |
9364679 |
T |
|
| Q |
334 |
aaactttttactttgg |
349 |
Q |
| |
|
||| | |||||||||| |
|
|
| T |
9364678 |
aaattgtttactttgg |
9364663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 69 - 349
Target Start/End: Original strand, 9065410 - 9065700
Alignment:
| Q |
69 |
gggggtttttgttgagaattctcttcactggataatgactcggaaacttgatcagttgcaatctcgtgtaattgttgcgtttaacctaacacacgagatt |
168 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||| |||||| |||| ||| || || | |||||||||| |||||||| |||| || ||| |
|
|
| T |
9065410 |
gggggtttttgttgagaattctattcacttgataatgacgaagaaactagatcggttacatccttctttaattgttgcatttaacctcacacttgaaatt |
9065509 |
T |
|
| Q |
169 |
ttcaat-gaggttccttttcctg---aaata---ggggaagaagtgaatagt---gagagttttgaaattggtgttgcggttttggaagggtgtctttgt |
258 |
Q |
| |
|
|||||| |||||||| |||||| ||||| || ||||| || |||||| ||||||||| |||| |||||| ||||||| ||||||||||||| |
|
|
| T |
9065510 |
ttcaattgaggttccccttcctgctgaaataagaggtgaagaggttaatagtaatgagagttttcaaatgactgttgctgttttgggagggtgtctttgt |
9065609 |
T |
|
| Q |
259 |
atgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttgg |
349 |
Q |
| |
|
|||||| |||||||| ||||| ||| ||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
9065610 |
atgattttgaattatgaaactactaatattgatggttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttgg |
9065700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 145 - 384
Target Start/End: Complemental strand, 10372100 - 10371858
Alignment:
| Q |
145 |
gcgtttaacctaacacacgagattttcaatgaggttccttttcctga---aataggggaagaagtgaatagtgagagttttgaaattggtgttgcggttt |
241 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||||| | ||||| | |||| |||||||| |||||| | |||||||||||| ||||||| |||| |
|
|
| T |
10372100 |
gcgtttaacctatcacttgagactttcaatgaggttcctctccctgatgaactaggtgaagaagttaatagtaatagttttgaaattcgtgttgctgttt |
10372001 |
T |
|
| Q |
242 |
tggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttt |
341 |
Q |
| |
|
| | ||||||||||||||||| |||| ||||| ||||| ||| ||||| |||||||||||||||||||||| | ||||||||| |||||||||||||| |
|
|
| T |
10372000 |
taggagggtgtctttgtatgactgtggattataaaactactaacgttgatatttgggtgatgaaagaatatggttctagagatagttggtgtaaactttt |
10371901 |
T |
|
| Q |
342 |
tactttggctgaatcatgtttcattttacctttgaaaactttg |
384 |
Q |
| |
|
|||||||| | ||||| |||| |||||||||| || ||||| |
|
|
| T |
10371900 |
tactttggttaaatcaagtttgggtttacctttggaatctttg |
10371858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 69 - 348
Target Start/End: Original strand, 12005936 - 12006224
Alignment:
| Q |
69 |
gggggtttttgttgagaattctcttcactggataatgactcggaaacttgatcagttgcaatctcgtgtaattgttgcgtttaacctaacacacgagatt |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||| |||| ||| || ||| ||||| | |||||||||||||||| ||| || |
|
|
| T |
12005936 |
gggggtttttgttgagaattctcttcactggatgatggtcaagaaacctgatgggttacatcagcgtttaattttcgcgtttaacctaacacttgaggtt |
12006035 |
T |
|
| Q |
169 |
ttcaatgaggttccttttcctga------aataggggaagaagtgaatagtga---gagttttgaaattggtgttgcggttttggaagggtgtctttgta |
259 |
Q |
| |
|
||||| ||||||||||||||||| || ||| ||||| || | | || | ||||||||||||| |||||| | ||||| ||||||||||||| |
|
|
| T |
12006036 |
ttcaacgaggttccttttcctgatgaaataagaggtgaagaggttatttgtaatcggagttttgaaattaatgttgctgatttgggagggtgtctttgtt |
12006135 |
T |
|
| Q |
260 |
tgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttg |
348 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| |||||||||||||||||||| |||| |||||| ||||||||||||||||||||| |
|
|
| T |
12006136 |
tgattgtgaattatcaaactactaagattgatgtatgggtgatgaaagaatatggttgtaaagatagttggtgtaaactttttactttg |
12006224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 217 - 376
Target Start/End: Original strand, 12012521 - 12012680
Alignment:
| Q |
217 |
agttttgaaattggtgttgcggttttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggat |
316 |
Q |
| |
|
|||||||||||| |||||| | ||||| ||||||||||||||||||||||||| |||||||| ||| |||||||| | |||||||||||||||||| | |
|
|
| T |
12012521 |
agttttgaaatttctgttgctgatttgggagggtgtctttgtatgattgtgaatcatcaaactactaagattgatgtattggtgatgaaagaatatggtt |
12012620 |
T |
|
| Q |
317 |
gtagagatagctggtgtaaactttttactttggctgaatcatgtttcattttacctttga |
376 |
Q |
| |
|
||| |||||| |||||||||||||||||||||| ||||| |||||| |||||||||||| |
|
|
| T |
12012621 |
gtaaagatagttggtgtaaactttttactttggtggaatcgtgtttcgttttacctttga |
12012680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 137 - 384
Target Start/End: Original strand, 11987373 - 11987629
Alignment:
| Q |
137 |
taattgttgcgtttaacctaacacacgagattttcaatgaggttccttttcct---gaaataggggaag---aagtg------aatagtgagagttttga |
224 |
Q |
| |
|
||||||| || ||||||||||||| |||| ||||||||||||||||||||||| |||||||| | || ||| | ||||||| |||||||| |
|
|
| T |
11987373 |
taattgtcgcatttaacctaacactcgaggttttcaatgaggttccttttcctcatgaaataggaggaggtgaagaggttactaatagtgcaagttttga |
11987472 |
T |
|
| Q |
225 |
aattggtgttgcggttttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagat |
324 |
Q |
| |
|
||||| |||||| ||||||| ||||||||||||| ||| ||||||| |||| ||| || |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11987473 |
aattgatgttgctgttttgggagggtgtctttgtttgactgtgaatcatcatact---aagattgatatttgggtgatgaaagaatatggatgtagagat |
11987569 |
T |
|
| Q |
325 |
agctggtgtaaactttttactttggctgaatcatgtttcattttacctttgaaaactttg |
384 |
Q |
| |
|
|| |||||||||||||| || ||| ||||| |||||| |||||||||||||| ||||| |
|
|
| T |
11987570 |
agttggtgtaaacttttcacattgatggaatcgtgtttcgttttacctttgaaatctttg |
11987629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 69 - 377
Target Start/End: Complemental strand, 9316340 - 9316026
Alignment:
| Q |
69 |
gggggtttttgttgagaattctcttcactggataatgactcggaaacttgatcagttgcaatctcgtgtaattgttgcgtttaacctaacacacgagatt |
168 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||| | || ||| ||| || || || | ||||| |||||||||||||||| |||||| |
|
|
| T |
9316340 |
gggggtttttgttcagaattctcttcactgggtaatgactcagcaaagtgaagagtcacacccttgtttcattgtcgcgtttaacctaacacttgagatt |
9316241 |
T |
|
| Q |
169 |
ttcaatgaggttccttttcctg---aaatag---gggaagaagtgaatagtgag------agttttgaaattggtgttgcggttttggaagggtgtcttt |
256 |
Q |
| |
|
||||||| ||||||| |||||| |||||| | ||| || ||||||||| |||||| |||||| |||||| ||||||| ||||||||||| |
|
|
| T |
9316240 |
ttcaatgtggttcctcttcctgctgaaatagaaagtatagaggttaatagtgagtgtgagagttttcaaattgctgttgctgttttgggagggtgtcttt |
9316141 |
T |
|
| Q |
257 |
gtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatc |
356 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| | | || |
|
|
| T |
9316140 |
gtatgattttgaattatcaaactactaaaactgatgtttgggtgatgaaagactatggat------ctagttggtgtaaactttttactttggttaattc |
9316047 |
T |
|
| Q |
357 |
atgtttcattttacctttgaa |
377 |
Q |
| |
|
|||||||| |||| ||||||| |
|
|
| T |
9316046 |
atgtttcactttatctttgaa |
9316026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 215 - 392
Target Start/End: Original strand, 9284163 - 9284340
Alignment:
| Q |
215 |
agagttttgaaattggtgttgcggttttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatgg |
314 |
Q |
| |
|
|||||||||| ||| ||||| ||||| | ||| |||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
9284163 |
agagttttgaccttgaggttgctgttttaggaggttgtcttagtatgattgtgaattatcaaactactaaaattgacgtttgggtgatgaaagaatatgg |
9284262 |
T |
|
| Q |
315 |
atgtagagatagctggtgtaaactttttactttggctgaatcatgtttcattttacctttgaaaactttgtggccttt |
392 |
Q |
| |
|
| ||||||||| ||||||||| |||||||||||| | ||||| | |||| ||||| ||||||| ||||| ||||||| |
|
|
| T |
9284263 |
ttctagagatagttggtgtaaaatttttactttggttaaatcacggttcactttacgtttgaaatctttgaggccttt |
9284340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 216 - 375
Target Start/End: Original strand, 9061115 - 9061274
Alignment:
| Q |
216 |
gagttttgaaattggtgttgcggttttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatgga |
315 |
Q |
| |
|
||||||| ||||| ||||||| ||||||| ||||||||||| ||| |||||||||| || || ||||||||||||||||||||||||||| |||||| |
|
|
| T |
9061115 |
gagttttaaaattcgtgttgctgttttgggtgggtgtctttgcatgtctgtgaattatgaagctactaaaattgatgtttgggtgatgaaagactatgga |
9061214 |
T |
|
| Q |
316 |
tgtagagatagctggtgtaaactttttactttggctgaatcatgtttcattttacctttg |
375 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||| | |||| ||||||| || ||||||| |
|
|
| T |
9061215 |
tctagagatagttggtgtaaactttttactttggttaaatcgtgtttcaattcacctttg |
9061274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 69 - 392
Target Start/End: Complemental strand, 9321288 - 9320974
Alignment:
| Q |
69 |
gggggtttttgttgagaattctcttcactggataatgactcggaaacttgatcagttgcaatctcgtgtaattgttgcgtttaacctaacacacgagatt |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| | || || || | |||||||||| ||||||||||||| || ||| |
|
|
| T |
9321288 |
gggggtttttgttgagaattctcttcactggataatgacaaagaaacttggtggattacatccttctttaattgttgcatttaacctaacacttgaaatt |
9321189 |
T |
|
| Q |
169 |
ttcaatgaggttccttttcctgaaataggggaagaagtgaatagtgagagttttgaaattggtgttgcggttttggaagggtgtctttgtatgattgtga |
268 |
Q |
| |
|
||||||| ||||||| ||||||| | | || | || ||||||||||||||||| ||||| ||||||| |||||||||||| |||| | |
|
|
| T |
9321188 |
ttcaatgtggttcctcttcctgatgttc----ataatag--taatgagagttttgaaattgatgttgatgttttgggagggtgtctttgcatgactt--- |
9321098 |
T |
|
| Q |
269 |
attatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcatgtttcatttt |
368 |
Q |
| |
|
|||| ||||| ||| |||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||| ||| | |||| |||| | ||| |
|
|
| T |
9321097 |
attacgaaactacaaaagttgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactttttactatggttaaatcgtgttacgattt |
9320998 |
T |
|
| Q |
369 |
acctttgaaaactttgtggccttt |
392 |
Q |
| |
|
|||||||||| ||||| ||||||| |
|
|
| T |
9320997 |
acctttgaaatctttgaggccttt |
9320974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 225 - 349
Target Start/End: Complemental strand, 9292096 - 9291972
Alignment:
| Q |
225 |
aattggtgttgcggttttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagat |
324 |
Q |
| |
|
||||| |||||| ||||| | || |||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
9292096 |
aattgctgttgctgttttaggagagtgtctttgtatgactgtgaattatgaaactactaaaattgatgtttgggtgatgaaacaatatggttctagagat |
9291997 |
T |
|
| Q |
325 |
agctggtgtaaactttttactttgg |
349 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
9291996 |
agttggtgtaaactttttactttgg |
9291972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 231 - 364
Target Start/End: Complemental strand, 16269242 - 16269109
Alignment:
| Q |
231 |
tgttgcggttttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctgg |
330 |
Q |
| |
|
|||||| ||||||| ||| ||||||||||| | |||||||||| ||||| ||||||||||||||||||||||||||| ||||||| ||||||||| ||| |
|
|
| T |
16269242 |
tgttgctgttttgggaggatgtctttgtataactgtgaattatgaaactactaaaattgatgtttgggtgatgaaagagtatggatatagagatagttgg |
16269143 |
T |
|
| Q |
331 |
tgtaaactttttactttggctgaatcatgtttca |
364 |
Q |
| |
|
|| ||||||||||| |||| | |||| ||||||| |
|
|
| T |
16269142 |
tgcaaactttttaccttggttaaatcgtgtttca |
16269109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 233 - 349
Target Start/End: Original strand, 7115633 - 7115749
Alignment:
| Q |
233 |
ttgcggttttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtg |
332 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| ||||||||| |||||| |||||||| |
|
|
| T |
7115633 |
ttgctgttttgggagggtgtctttgtatgattgtgaattatagaactactaaaacagatgtttgggtgatgaaacaatatggatctagagacagctggtg |
7115732 |
T |
|
| Q |
333 |
taaactttttactttgg |
349 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
7115733 |
taaactttttacattgg |
7115749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 216 - 364
Target Start/End: Original strand, 8573479 - 8573627
Alignment:
| Q |
216 |
gagttttgaaattggtgttgcggttttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatgga |
315 |
Q |
| |
|
||||||| || || || |||| ||||||| ||||||||||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
8573479 |
gagttttaaatttcgtcttgctgttttgggtgggtgtctttgtatgtctgtgaattatgaaaccactgaaattgatgtttgggtgatgaaagaatatggt |
8573578 |
T |
|
| Q |
316 |
tgtagagatagctggtgtaaactttttactttggctgaatcatgtttca |
364 |
Q |
| |
|
| ||||||||| |||||||||||||||||||| | | |||| ||||||| |
|
|
| T |
8573579 |
tctagagatagttggtgtaaactttttactttcgttaaatcgtgtttca |
8573627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 217 - 374
Target Start/End: Original strand, 12018857 - 12019020
Alignment:
| Q |
217 |
agttttgaaattggtgttgcggttttggaagggtgtctttgtatgattgtgaattatc------aaactgttaaaattgatgtttgggtgatgaaagaat |
310 |
Q |
| |
|
|||||| |||||| |||||| | ||||| ||||||||||||| ||||| ||||||||| ||| | ||| || | |||||||||||||||||||| |
|
|
| T |
12018857 |
agttttcaaattgctgttgctgatttgggagggtgtctttgtttgattatgaattatcgaaatcaaattactaagataggtgtttgggtgatgaaagaat |
12018956 |
T |
|
| Q |
311 |
atggatgtagagatagctggtgtaaactttttactttggctgaatcatgtttcattttaccttt |
374 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||| |||||| |||||||||| |
|
|
| T |
12018957 |
atggatgtagagatagttggtgtaaactttttactttgatggaatcgtgtttcgttttaccttt |
12019020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 266 - 349
Target Start/End: Complemental strand, 7612057 - 7611974
Alignment:
| Q |
266 |
tgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttgg |
349 |
Q |
| |
|
|||||||| ||||| |||| |||||||||||||||||||||||||||||| | |||||| ||||||||| | |||||||||| |
|
|
| T |
7612057 |
tgaattatgaaactattaagtttgatgtttgggtgatgaaagaatatggattaaaagatagttggtgtaaattgtttactttgg |
7611974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 7115475 - 7115579
Alignment:
| Q |
87 |
ttctcttcactggataatgactcggaaacttgatcagttgcaatctcgtgtaattgttgcgtttaacctaacacacgagattttcaatgaggttcctttt |
186 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| ||| || || || ||||||| |||||||||||||||| ||| ||||| |||||||||| || |
|
|
| T |
7115475 |
ttctgttcactggataatgtctcggaaacttgatgagtcacacccttgtttaattgtcgcgtttaacctaacacttgagcgtttcattgaggttcctctt |
7115574 |
T |
|
| Q |
187 |
cctga |
191 |
Q |
| |
|
||||| |
|
|
| T |
7115575 |
cctga |
7115579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 349
Target Start/End: Original strand, 17566107 - 17566190
Alignment:
| Q |
266 |
tgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttgg |
349 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| ||||||||||||| |||||||| ||||||||| | ||||| |||| |
|
|
| T |
17566107 |
tgaattatcaaactactaatgttgatgtttgggtgattaaagaatatggatttagagataattggtgtaaattgtttaccttgg |
17566190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 347
Target Start/End: Original strand, 8579532 - 8579592
Alignment:
| Q |
287 |
ttgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttacttt |
347 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| ||||||||| ||||||||| | |||||||| |
|
|
| T |
8579532 |
ttgaggtttgggtgatgaaaaaatatggatttagagatagttggtgtaaattgtttacttt |
8579592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 12012432 - 12012486
Alignment:
| Q |
137 |
taattgttgcgtttaacctaacacacgagattttcaatgaggttccttttcctga |
191 |
Q |
| |
|
||||||| |||||||||||||||| ||| |||||||||||||||| |||||||| |
|
|
| T |
12012432 |
taattgtcgcgtttaacctaacacttgagcttttcaatgaggttccatttcctga |
12012486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 190
Target Start/End: Complemental strand, 16269398 - 16269277
Alignment:
| Q |
69 |
gggggtttttgttgagaattctcttcactggataatgactcggaaacttgatcagttgcaatctcgtgtaattgttgcgtttaacctaacacacgagatt |
168 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| |||||| | ||||||||| ||| || || | |||| || |||||||||||||||| |||||| |
|
|
| T |
16269398 |
gggggtttttgttgagaattctattcgctgtataatggcgaagaaacttgacgggttacatccttctttaatcgtcgcgtttaacctaacacttgagatt |
16269299 |
T |
|
| Q |
169 |
ttcaatgaggttccttttcctg |
190 |
Q |
| |
|
||||| ||||||||| |||||| |
|
|
| T |
16269298 |
ttcaacgaggttcctcttcctg |
16269277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 9284008 - 9284044
Alignment:
| Q |
69 |
gggggtttttgttgagaattctcttcactggataatg |
105 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9284008 |
gggggtttttgttgagaattctattcactggataatg |
9284044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 8576392 - 8576446
Alignment:
| Q |
225 |
aattggtgttgcggttttggaagggtgtctttgtatgattgtgaattatcaaact |
279 |
Q |
| |
|
||||| |||||| ||||| | ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
8576392 |
aattgatgttgctgtttttggagggtgtctttgtatgagtgtgaattatgaaact |
8576446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 183
Target Start/End: Original strand, 12018716 - 12018814
Alignment:
| Q |
85 |
aattctcttcactggataatgactcggaaacttgatcagttgcaatctcgtgtaattgttgcgtttaacctaacacacgagattttcaatgaggttcct |
183 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||| | || ||| || ||||||| || |||||||| |||| ||| |||||||||||||||||| |
|
|
| T |
12018716 |
aattctcttcattggataatgacaaggaaatttgataactttcaacctttgttaattgtcgcatttaacctcacactcgatattttcaatgaggttcct |
12018814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 17565966 - 17566024
Alignment:
| Q |
137 |
taattgttgcgtttaacctaacacacgagattttcaatgaggttccttttcctgaaata |
195 |
Q |
| |
|
||||||| ||||||||||| | ||| |||||||||| ||||||||| ||||||||||| |
|
|
| T |
17565966 |
taattgtcgcgtttaacctcaaacaagagattttcatcgaggttcctcttcctgaaata |
17566024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 9284076 - 9284129
Alignment:
| Q |
137 |
taattgttgcgtttaacctaacacacgagattttcaatgaggttccttttcctg |
190 |
Q |
| |
|
||||||| |||||||||||||||| ||| ||||||| ||||||||| |||||| |
|
|
| T |
9284076 |
taattgtcgcgtttaacctaacactagaggttttcaaagaggttcctcttcctg |
9284129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 7612201 - 7612157
Alignment:
| Q |
139 |
attgttgcgtttaacctaacacacgagattttcaatgaggttcct |
183 |
Q |
| |
|
||||| || |||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
7612201 |
attgtcgcttttaaccttacacaagagattttcaatgaggttcct |
7612157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 163 - 363
Target Start/End: Complemental strand, 26575085 - 26574882
Alignment:
| Q |
163 |
gagattttcaatgaggttccttttcctga---aataggggaagaagtgaatagtgagagttttgaaattggtgttgcggttttggaagggtgtctttgta |
259 |
Q |
| |
|
|||| |||||| ||||||||| ||||||| |||||||||| |||| |||||| |||||||| ||||| ||||||| | ||| | |||||||||||||| |
|
|
| T |
26575085 |
gagactttcaacgaggttcctcttcctgatgaaataggggaacaagttaatagtaagagttttaaaattcgtgttgctgatttaggagggtgtctttgta |
26574986 |
T |
|
| Q |
260 |
tgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcatg |
359 |
Q |
| |
|
||| |||| ||||| || | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| | |||| || |
|
|
| T |
26574985 |
tgactgtggattataaagatactaaaattgatgtttgggtgatgaaagaatatggatgtagagatagttggtgtaaactttttactgtggttaaatcgtg |
26574886 |
T |
|
| Q |
360 |
tttc |
363 |
Q |
| |
|
|||| |
|
|
| T |
26574885 |
tttc |
26574882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 561319 - 561273
Alignment:
| Q |
287 |
ttgatgtttgggtgatgaaagaatatggatgtagagatagctggtgt |
333 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||| |||||| |
|
|
| T |
561319 |
ttgatgtttgggtaatgaaagaatatggatttagagatagttggtgt |
561273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 561481 - 561423
Alignment:
| Q |
137 |
taattgttgcgtttaacctaacacacgagattttcaatgaggttccttttcctgaaata |
195 |
Q |
| |
|
||||||| ||||||||||| | || ||||||||||||||||||||| ||||||||||| |
|
|
| T |
561481 |
taattgtcgcgtttaaccttgcccaagagattttcaatgaggttcctcttcctgaaata |
561423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 234 - 392
Target Start/End: Complemental strand, 45243849 - 45243691
Alignment:
| Q |
234 |
tgcggttttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgt |
333 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| | |||||||| |||||| |
|
|
| T |
45243849 |
tgcggttttgggagagtgtctttgtatgattgtgaattatcaaactaatgaaattgatgtttgggtgatgaaagaatatggttctagagatatttggtgt |
45243750 |
T |
|
| Q |
334 |
aaactttttactttggctgaatcatgtttcattttacctttgaaaactttgtggccttt |
392 |
Q |
| |
|
|||||||||||||||| | |||| ||||||| ||| | |||| || ||||| ||||||| |
|
|
| T |
45243749 |
aaactttttactttggttaaatcgtgtttcaattttcatttggaatctttgaggccttt |
45243691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 243 - 349
Target Start/End: Complemental strand, 45230576 - 45230467
Alignment:
| Q |
243 |
ggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatg---tttgggtgatgaaagaatatggatgtagagatagctggtgtaaactt |
339 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | ||||||||| |||||||||||| |
|
|
| T |
45230576 |
ggaagagtgtctttgtatgattgtgaattatcaaactaataaaattgatgatgtttgggtgatgaaagaatatggttctagagatagttggtgtaaactt |
45230477 |
T |
|
| Q |
340 |
tttactttgg |
349 |
Q |
| |
|
|||||||||| |
|
|
| T |
45230476 |
tttactttgg |
45230467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 45238050 - 45237970
Alignment:
| Q |
284 |
aaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttggctgaatcatgtttca |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| | |||||| ||||||| |
|
|
| T |
45238050 |
aaattgatgtttgggtgatgaaagaatatggatctagagatagttggtgtaaactttttactttagttgaatcgtgtttca |
45237970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 69 - 345
Target Start/End: Complemental strand, 4795 - 4510
Alignment:
| Q |
69 |
gggggtttttgttgagaattctcttcactggataatgactcggaaacttgatcagttgcaatctcgtgtaattgttgcgtttaacctaacacacgagatt |
168 |
Q |
| |
|
||||||||| |||||| ||||| |||||||||||||| | |||||||||| ||| || || | ||||||| || ||||||||||||| || ||| |
|
|
| T |
4795 |
gggggttttggttgaggattctattcactggataatggcaaagaaacttgatgggttacatccttctctaattgtcgcttttaacctaacacttgaaatt |
4696 |
T |
|
| Q |
169 |
ttcaatgaggttccttttcctga---aataggggaagaagtg---aat---agtgagagttttgaaattggtgttgcggttttggaagggtgtctttgta |
259 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||||||| | ||| | ||| ||| ||||||||| |||||| | ||||| ||| |||||||||| |
|
|
| T |
4695 |
ttcaatgaggttcctcttcctgacgaaataggtgaagaagaggttaattcaaatgacagtgttgaaattgatgttgctgctttgggaggatgtctttgta |
4596 |
T |
|
| Q |
260 |
tgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttact |
345 |
Q |
| |
|
||| |||||||||| ||||| ||||||||||||||||||||||||| ||||||||| | |||||| |||||||||||||||||| |
|
|
| T |
4595 |
tgactgtgaattatgaaactactaaaattgatgtttgggtgatgaaacaatatggattaaaagatagttggtgtaaactttttact |
4510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 37 - 378
Target Start/End: Original strand, 41966509 - 41966841
Alignment:
| Q |
37 |
atgccgtacgctctttcctatcctcgaacagagggggtttttgttgagaattctcttcactggataatgactcggaaacttgatcagttgcaatctcgtg |
136 |
Q |
| |
|
|||||||| ||||||| |||| ||| ||| ||||||||||||| | ||||||||||||||||||||||| | |||||||| || || || || |
|
|
| T |
41966509 |
atgccgtatgctctttactatgctcaaaccatgggggtttttgttcacaattctcttcactggataatgaccaaggaacttgatggattacacccttgtt |
41966608 |
T |
|
| Q |
137 |
taattgttgcgtttaacctaacacacgagattttcaatgaggttccttttcctg---aaataggggaagaagtgaatagtgagagttttgaaattggtgt |
233 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||| |||||||| |||||| ||||||| || | || |||||||||| ||| |
|
|
| T |
41966609 |
taattgtcgcgtttaacctaacacttgagattttcaaccaggttcctcttcctgctgaaataggtcaaaa------------gaattttgaaatttctgt |
41966696 |
T |
|
| Q |
234 |
tgcggttttggaagggtgtctttgtatgattgtgaattatcaaactgttaaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgt |
333 |
Q |
| |
|
| | ||||||| |||||||||||||||| ||||| ||||||||||| | |||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
41966697 |
ttctgttttgggagggtgtctttgtatggttgtggattatcaaactagcgatgttgatgtttgggtgatgaaagaatatcgatctagagatagctggtgt |
41966796 |
T |
|
| Q |
334 |
aaactttttactttggctgaatcatgtttcattttacctttgaaa |
378 |
Q |
| |
|
|||||||||||||||| | |||| ||||||| || | |||||||| |
|
|
| T |
41966797 |
aaactttttactttggttaaatcttgtttcacttcatctttgaaa |
41966841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 215 - 392
Target Start/End: Complemental strand, 37462661 - 37462481
Alignment:
| Q |
215 |
agagttttgaaattggtgttgcggttttggaagggtgtctttgtatgattgtgaattatcaaa---ctgttaaaattgatgtttgggtgatgaaagaata |
311 |
Q |
| |
|
||||||||| | ||| |||||| ||||||| ||| ||||||||||||| |||||||||| ||| || |||| ||||||||||||||||||||||||| |
|
|
| T |
37462661 |
agagttttggacttgatgttgctgttttgggaggctgtctttgtatgactgtgaattataaaaaaactactaaatttgatgtttgggtgatgaaagaata |
37462562 |
T |
|
| Q |
312 |
tggatgtagagatagctggtgtaaactttttactttggctgaatcatgtttcattttacctttgaaaactttgtggccttt |
392 |
Q |
| |
|
||||| ||||||||| ||||||||||||| |||| ||| | |||| ||||||| || |||||||||| ||||| ||||||| |
|
|
| T |
37462561 |
tggatctagagatagttggtgtaaactttgtactgtggataaatcgtgtttcacttcacctttgaaatctttgaggccttt |
37462481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 39427740 - 39427680
Alignment:
| Q |
287 |
ttgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttacttt |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||| ||||||||| | |||||||| |
|
|
| T |
39427740 |
ttgatgtttgggtgatgaaagaatatggatatagatatagttggtgtaaattgtttacttt |
39427680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 39427870 - 39427819
Alignment:
| Q |
145 |
gcgtttaacctaacacacgagattttcaatgaggttccttttcctgaaatag |
196 |
Q |
| |
|
||||||||| |||| || ||||||||||||||||||||| |||||||||||| |
|
|
| T |
39427870 |
gcgtttaacataactcaagagattttcaatgaggttcctcttcctgaaatag |
39427819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 36224520 - 36224454
Alignment:
| Q |
282 |
taaaattgatgtttgggtgatgaaagaatatggatgtagagatagctggtgtaaactttttactttg |
348 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||| ||||||||| | ||||||||| |
|
|
| T |
36224520 |
taaatttgatgtttgggtgatgaaagaatatggatttagagatagttggtgtaaattgtttactttg |
36224454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University