View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8065_low_3 (Length: 380)
Name: NF8065_low_3
Description: NF8065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8065_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 6 - 372
Target Start/End: Complemental strand, 35201156 - 35200787
Alignment:
| Q |
6 |
ttttctttcaagttgttagtatcaagatcttaataacatgaacaaaaaatataagacaattgcatggaccttttacagataaacatacgtatatattagg |
105 |
Q |
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| T |
35201156 |
ttttctttcaagttgttagtatcaagatcttaataacatgaacaaaaaatataagacaattgcatggaccttttacagataaacatacgtatatattagg |
35201057 |
T |
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| Q |
106 |
taataaagatggtttctctattaagatagtatttattcataaagggagagacaaattaacagaagtatataatgataaac-nnnnnnnnnnnnntgaaac |
204 |
Q |
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| T |
35201056 |
taataaagatggtttctctattaagatagtatttattcataaagggagagacaaattaacagaagtatataatgataaacaaaaataaaaaaaatgaaac |
35200957 |
T |
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| Q |
205 |
aagaacaatcaatatgtttatatgatgtactaaaagttccaaatgaaagggacaaaaaaccaccatgtggctctttacatctcaagaagactcaattgaa |
304 |
Q |
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| T |
35200956 |
aagaacaatcaatatgtttatatgatgtactaaaagttccaaatgaaagggacaaaaaaccaccatgtggctctttacatctcaagaagactcaattgaa |
35200857 |
T |
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| Q |
305 |
ttacacaacgaggtcacactttgcatttgtaattaaaaga--ctttgttctactccataattttcttctc |
372 |
Q |
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| T |
35200856 |
ttacacaacgaggtcacactttgcatttgtaattaaaagactctttgttctactccataattttcttctc |
35200787 |
T |
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