View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8065_low_8 (Length: 226)
Name: NF8065_low_8
Description: NF8065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8065_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 209
Target Start/End: Complemental strand, 32288505 - 32288308
Alignment:
| Q |
15 |
cacagacagactaactaagcaccattgccagcaccaagnnnnnnnnnn---ctaagcactaaaaatactatagctagctatgacccatgaccttatatat |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32288505 |
cacacacagactaactaagcaccattgccagcaccaagaaaagaaaaaaaactaagcactaataatactatagctagctatgacccatgaccttatatat |
32288406 |
T |
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| Q |
112 |
caatgcacgcagcttcttcatttctgcttattgccacccatgttcatgttcattccagcattgccacctgcagcaccaccgccgccgccgcccatatt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
32288405 |
caatgcacgcagcttcttcatttctgcttattgccacccatgttcatgttcattccagtattgccacctgcagcaccaccgccgccgccacccatatt |
32288308 |
T |
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