View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8066_high_2 (Length: 556)
Name: NF8066_high_2
Description: NF8066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8066_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Complemental strand, 26304204 - 26303664
Alignment:
| Q |
1 |
tccttaattgtgctcatgtgcgataatttctcgattttccgtcgtatggaggttgcctccgtacccaagtttattttccctgctgctaccatgatactgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26304204 |
tccttaattgtgctcatgtgcgataatttctcgatttgccatcgtatggaggttgcctccgtacccaagtttattttccctgctgctaccatgatactgt |
26304105 |
T |
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| Q |
101 |
tgctatcattagtcgtaagtgacatttgcattgcaaggttagtgaatgtgggtagagaatagtaaatgattattgggcaaactaccattttagtccctaa |
200 |
Q |
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| T |
26304104 |
tactatcataaatcgtaa-tgacatttgcattgcaaggttagtgaatgtgggtagagaatagtaaatgattattgggcaaactaccattttagtccctaa |
26304006 |
T |
|
| Q |
201 |
aagtgtaacgcgtcatcaatttagtctatgactcaaacaaaatcacaaattaatcctccaatttgcactcagttagtcattttagtctttgacgttaaag |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26304005 |
aagtgcaacgcgtcatcaatttagtctatgactcaaacaaaatcacaaattaatcctccattttgcactcagttagtcattttagtctttgacgttaaag |
26303906 |
T |
|
| Q |
301 |
tgggacgttaagtcattaaaattggtggcgtgtcagttatgaaggtcaactagcttgttgatgtgtccttagggaccaaaatgaaagaaaataaaattct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26303905 |
tgggacgttaagtcattaaaattggtggcgtgtcaggtatgaaggtcaactagcttgttgatgtgtccttagggaccaaaatgaaagaaaataaaattct |
26303806 |
T |
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| Q |
401 |
tcttcatttcccaacaggtaccttcctcaactctctcactctttgctctgttgtttttatatatcatcataatgttttgctaagttccttccattttgaa |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26303805 |
tcttcatttcccaacaggtaccttcctcaactctctcactctttgctctgttgtttttatatatcatcataatgttttgctaagttccttccattttgaa |
26303706 |
T |
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| Q |
501 |
tctctgttatgctatgtcctttgattctccactacttatatt |
542 |
Q |
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| T |
26303705 |
tctctgttatgctatgtcctttgattctccactacttatatt |
26303664 |
T |
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