View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8066_high_4 (Length: 483)
Name: NF8066_high_4
Description: NF8066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8066_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 33875685 - 33876145
Alignment:
| Q |
1 |
ttacattgtcaaaacaattacaaatatagcaagagataatgaaagttgacttagtggtttagaatggagacaaagaattcatgagagattattattgact |
100 |
Q |
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| T |
33875685 |
ttacattgtcaaaacaattacaag-atagcaagagataatgaaagttgacttagtggtttagaatggagacaaagaattcatgagagattattattgact |
33875783 |
T |
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| Q |
101 |
ttcaaccatgaaatgtggctttaggtaattatgaaatagttaacatgcatgaaattttgaaaaagcaaagtgaaaatgtgaagttatataaaagattggg |
200 |
Q |
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| T |
33875784 |
ttcaaccatgaaatgtggctttaggtaattatgaaatagttaacatgcatgaaattttgaaaaagcaaagtgaaaatgtgcagttatataaaagattggg |
33875883 |
T |
|
| Q |
201 |
tgtaggataagttacgtagggaaaatacataaatttgctatgaacatacattcaaacttacgtgttaagtgatgtacttgtcaagttatttaaattgaaa |
300 |
Q |
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| T |
33875884 |
tgtaggataagttacgtagggaaaatacataaatttgctatgaacatacattcaaacttacgtgttaagtgatgtacttgtcaag-tatttaaattgaaa |
33875982 |
T |
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| Q |
301 |
attagctaactttatagattttgtagaccaaaatctgcgttttgaactttgtgtcactagtaagttttagaagaggctaaggatgtgctannnnnnnnnn |
400 |
Q |
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| T |
33875983 |
attagctaactttatagattttgtagaccaaaatctgcgttttgaactttgtgtcactagtaagttttagaagacgctaaggatgtgcta--tttttttt |
33876080 |
T |
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| Q |
401 |
cgtattatttttcccttttaatcttgagtgatttgtagcttaatgaacattttagctatagatca |
465 |
Q |
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| T |
33876081 |
cgtagtatttttcccttttaatcttgagtgatttgtttcttaatgaacattttagctatagatca |
33876145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 33879956 - 33880061
Alignment:
| Q |
1 |
ttacattgtcaaaacaattacaaatatagcaagagataatgaaagttgacttagtggtttagaatggagacaaagaattcat---gagagattattattg |
97 |
Q |
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||||||||||||||||||||| ||||||||||||| |||| | |||||||| |||||| ||||| | ||||||| || || |||||||||| |||| |
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| T |
33879956 |
ttacattgtcaaaacaattac-aatatagcaagaggcaatggaggttgactttttggttttgaatgaaaacaaagactttataccgagagattatcattg |
33880054 |
T |
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| Q |
98 |
actttca |
104 |
Q |
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||||||| |
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| T |
33880055 |
actttca |
33880061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 389
Target Start/End: Original strand, 33880563 - 33880635
Alignment:
| Q |
317 |
gattttgtagaccaaaatctgcgttttgaactttgtgtcactagtaagttttagaagaggctaaggatgtgct |
389 |
Q |
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| T |
33880563 |
gattttgtggacaaaaatccgcgtttgtaacattgtgtcacttataagttttagaagagactaaggatgtgct |
33880635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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