View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8066_low_11 (Length: 341)
Name: NF8066_low_11
Description: NF8066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8066_low_11 |
 | |
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| [»] scaffold0045 (2 HSPs) |
| | |
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| [»] scaffold0083 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 35 - 325
Target Start/End: Original strand, 10102401 - 10102692
Alignment:
| Q |
35 |
ggggtatggtcgcgatcctctactcactctatgagtaactctcgtcagttactcagtttcatagctctatagattttaattttattgattcaactgttga |
134 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||| |||| || ||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
10102401 |
ggggtatggtcgtgatcctccactcactctatgagtaactctcgtcggttaatccgtttcatagctctttagattttaattttatcgattcaactgttga |
10102500 |
T |
|
| Q |
135 |
attatct-aacgaaaatgtatatattgtttgaaaagtatattcaagcaataatgaatacctacattcagcaagcttccaatatgcaatcagtacctcctc |
233 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10102501 |
attatcttaacgaaaatgtatatattgtttgaaaagtatattcaagcaataatgaatacctacattcagcaagcttccaaaatgcaatcagtacctcctc |
10102600 |
T |
|
| Q |
234 |
aagaaatgcctttccctaattttttctttagatgattgaaacaaaaattgaaatttcaagaccaaattacacatcaaaatattaatatcttt |
325 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10102601 |
aagaaatgcctttccctaattttttctttagatgattgaaacaaaaattgaaatttcaagagcaaattacacatcaaaatattaatatcttt |
10102692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 35 - 325
Target Start/End: Original strand, 10213324 - 10213615
Alignment:
| Q |
35 |
ggggtatggtcgcgatcctctactcactctatgagtaactctcgtcagttactcagtttcatagctctatagattttaattttattgattcaactgttga |
134 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||| |||| || ||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
10213324 |
ggggtatggtcgtgatcctccactcactctatgagtaactctcgtcggttaatccgtttcatagctctttagattttaattttatcgattcaactgttga |
10213423 |
T |
|
| Q |
135 |
attatct-aacgaaaatgtatatattgtttgaaaagtatattcaagcaataatgaatacctacattcagcaagcttccaatatgcaatcagtacctcctc |
233 |
Q |
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|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10213424 |
attatcttaacgaaaatgtatatattgtttgaaaagtatattcaagcaataatgaatacctacattcagcaagcttccaaaatgcaatcagtacctcctc |
10213523 |
T |
|
| Q |
234 |
aagaaatgcctttccctaattttttctttagatgattgaaacaaaaattgaaatttcaagaccaaattacacatcaaaatattaatatcttt |
325 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10213524 |
aagaaatgcctttccctaattttttctttagatgattgaaacaaaaattgaaatttcaagagcaaattacacatcaaaatattaatatcttt |
10213615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 29 - 230
Target Start/End: Original strand, 10075366 - 10075568
Alignment:
| Q |
29 |
atgtaaggggtatggtcgcgatcctctactcactctatgagtaactctcgtcagttactcagtttcatagctctatagattttaattttattgattcaac |
128 |
Q |
| |
|
||||| |||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||| | |
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|
| T |
10075366 |
atgtagggggtacggtcgcggtcctccactcactctatgagtaaatctcgtcagttactccgtttcatagctctatagattttaattttatcgattcagc |
10075465 |
T |
|
| Q |
129 |
tgttgaattatc-taacgaaaatgtatatattgtttgaaaagtatattcaagcaataatgaatacctacattcagcaagcttccaatatgcaatcagtac |
227 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
10075466 |
tgttgaattatcttaacaaaaatgtatatattgtttgaaaagtatattcaagcaataatcaatacctacattcagaaagcttccaatatgcaatcagtac |
10075565 |
T |
|
| Q |
228 |
ctc |
230 |
Q |
| |
|
||| |
|
|
| T |
10075566 |
ctc |
10075568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 29 - 226
Target Start/End: Original strand, 10136919 - 10137112
Alignment:
| Q |
29 |
atgtaaggggtatggtcgcgatcctctactcactctatgagtaactctcgtcagttactcagtttcatagctctatagattttaattttattgattcaac |
128 |
Q |
| |
|
||||| || ||||||||||||||||| |||||||| ||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
10136919 |
atgtagggagtatggtcgcgatcctccactcactccttgagtaactctcgtcagttgctccgtttcatagctctttagattttaattttatcgattcaac |
10137018 |
T |
|
| Q |
129 |
tgttgaattatc-taacgaaaatgtatatattgtttgaaaagtatattcaagcaataatgaatacctacattcagcaagcttccaatatgcaatcagta |
226 |
Q |
| |
|
| |||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10137019 |
t-----attatcttaacgaaaatgtatatattgtttcaaaagtatattcaagcaataatcaatacctacattcagcaagcttccaatatgcaatcagta |
10137112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 10221398 - 10221480
Alignment:
| Q |
1 |
tgcccttaaaggatcctctctcttcggaatgtaaggggtatggtcgcgatcctctactcactctatgagtaactctcgtcagt |
83 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
10221398 |
tgcccttaaaggatcctctctcttcggaatgtaaggggtatggtcgcgatcctccaatcactctatgagtaactctcgtcagt |
10221480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 231 - 324
Target Start/End: Original strand, 10137156 - 10137249
Alignment:
| Q |
231 |
ctcaagaaatgcctttccctaattttttctttagatgattgaaacaaaaattgaaatttcaagaccaaattacacatcaaaatattaatatctt |
324 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||| |||| |
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| T |
10137156 |
ctcaagaaatgcttttccctaattttttctttagatggttgaaacaaaaattgaaatttcaagagcaaatttcacatcaaaatattaatgtctt |
10137249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 231 - 324
Target Start/End: Original strand, 10075608 - 10075701
Alignment:
| Q |
231 |
ctcaagaaatgcctttccctaattttttctttagatgattgaaacaaaaattgaaatttcaagaccaaattacacatcaaaatattaatatctt |
324 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||| |||| |
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|
| T |
10075608 |
ctcaagaaatgcttttccctaattatttctttagatggttgaaacaaaaattgaaatttcaaaagcaaattacacatcaaaatattaatgtctt |
10075701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 10377860 - 10377787
Alignment:
| Q |
29 |
atgtaaggggtatggtcgcgatcctctactcactctatgagtaactctcgtcagttactcagtttcatagctct |
102 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||| || ||||||| |||||||| |||| |
|
|
| T |
10377860 |
atgtagggggtatggtcgcgatcctccactcactctatgagtaactctcatcggttactccgtttcataactct |
10377787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 10662390 - 10662440
Alignment:
| Q |
269 |
ttgaaacaaaaattgaaatttcaagaccaaattacacatcaaaatattaat |
319 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10662390 |
ttgaaacaaaaactgaaatttcaagagcaaattacacatcaaaatattaat |
10662440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 319
Target Start/End: Original strand, 10514958 - 10515007
Alignment:
| Q |
270 |
tgaaacaaaaattgaaatttcaagaccaaattacacatcaaaatattaat |
319 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
10514958 |
tgaaacaaaaactgaaatttcaagagcaaattacatatcaaaatattaat |
10515007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 10511409 - 10511453
Alignment:
| Q |
169 |
gtatattcaagcaataatgaatacctacattcagcaagcttccaa |
213 |
Q |
| |
|
||||||||||||| |||| |||||||| ||||||||||||||||| |
|
|
| T |
10511409 |
gtatattcaagcactaatcaatacctaaattcagcaagcttccaa |
10511453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 10662168 - 10662212
Alignment:
| Q |
169 |
gtatattcaagcaataatgaatacctacattcagcaagcttccaa |
213 |
Q |
| |
|
||||||||||||| |||| |||||||| ||||||||||||||||| |
|
|
| T |
10662168 |
gtatattcaagcactaatcaatacctaaattcagcaagcttccaa |
10662212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 26816756 - 26816838
Alignment:
| Q |
1 |
tgcccttaaaggatcctctctcttcggaatgtaaggggtatggtcgcgatcctctactcactctatgagtaactctcgtcagt |
83 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
26816756 |
tgcccttaaaggatcctctctcttcggaatgtaaggggtatggtcgcgatcctccaatcactctatgagtaactctcgtcagt |
26816838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 229 - 302
Target Start/End: Original strand, 86055 - 86130
Alignment:
| Q |
229 |
tcctcaagaaatgcctttccctaattttttct--ttagatgattgaaacaaaaattgaaatttcaagaccaaatta |
302 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | ||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
86055 |
tcctcaagaaatgcttttccctaattttttttcattagatggttgaaacaaaaattgaaatttcaagagcaaatta |
86130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 85959 - 86017
Alignment:
| Q |
174 |
ttcaagcaataatg-aatacctacattcagcaa-gcttccaatatgcaatcagtacctc |
230 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
85959 |
ttcaagcaataattcaatacctacattcagcaaagcttccaatatgcaatcagtacctc |
86017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 324
Target Start/End: Complemental strand, 51666 - 51617
Alignment:
| Q |
275 |
caaaaattgaaatttcaagaccaaattacacatcaaaatattaatatctt |
324 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
51666 |
caaaaattgaaatttcaagagtaaattacacatcaaaacattaatatctt |
51617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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