View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8066_low_12 (Length: 249)
Name: NF8066_low_12
Description: NF8066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8066_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 15963692 - 15963449
Alignment:
| Q |
1 |
cagcctcattaagctggccaaagag--gcaagtgcaacctacctgtaacnnnnnnnnaactcgatatccagcttaaggaccgactaatcgggaagattaa |
98 |
Q |
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| T |
15963692 |
cagcctcattaagctggccaaagagaggcaagtgcaacctacctgtaacttttttttaactcgatatccaacttaaggaccgattaatcgaaaagattaa |
15963593 |
T |
|
| Q |
99 |
tttcactgtccacttgtagaagcctcatttaaagcgagagcaaagctcatgtgcatggactagtcctcaaaaattgtcactagaagtattcaaacttaag |
198 |
Q |
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| T |
15963592 |
tttcactatccacttgtagaagtttcgtttaaagccagagcaaagttcatgtgcatggactagcccacaaaaattgtcactggaagtattcaaacttaag |
15963493 |
T |
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| Q |
199 |
accttaagaggaatacaatccaatgtctcaagccaacaccacca |
242 |
Q |
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| T |
15963492 |
accttaagaggaatacaatctaatgtctcaagcctacaccacca |
15963449 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 47079773 - 47079719
Alignment:
| Q |
188 |
tcaaacttaagaccttaagaggaatacaatccaatgtctcaagccaacaccacca |
242 |
Q |
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|||||| ||||||||||||||||| ||| ||||| || |||||||||||||||| |
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| T |
47079773 |
tcaaacctaagaccttaagaggaacacattccaagatcccaagccaacaccacca |
47079719 |
T |
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