View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8066_low_13 (Length: 227)
Name: NF8066_low_13
Description: NF8066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8066_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 3 - 160
Target Start/End: Complemental strand, 14716047 - 14715890
Alignment:
| Q |
3 |
aaaaggggaaaaaactctttctattcaattaattgagaaatgagtacataagtgtatttatatgtgtatagtttcaacaacttgcttagttgtgtaacta |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14716047 |
aaaaggggaaaaaactctttctattcaattaattgagaaatgagtacataagtgtatttatatgtgtatagtttcaacaacttgcttagttgtgtaacta |
14715948 |
T |
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| Q |
103 |
attcactaatcctattataaccaactacttatagctaattacaacaattatttctaca |
160 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14715947 |
attcactaatcctattgtaaccaactacttatagctaattacaacaattatttctaca |
14715890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 8990801 - 8990642
Alignment:
| Q |
1 |
agaaaaggggaaaaaactctttctattcaattaattgagaaatgagtacataagtgtatttatatgtgtatagtttcaacaacttgcttagttgtgtaac |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8990801 |
agaaaagggggaaaaactctttctattcaattaattgagaaatgagtacataagtgtatttatatgtgtatagtttcaacaacttgcttagttgtgtaac |
8990702 |
T |
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| Q |
101 |
taattcactaatcctattataaccaactacttatagctaattacaacaattatttctaca |
160 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8990701 |
taattcactaatcctattgtaaccaactacttatagctaattacaacaattatttctaca |
8990642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 9015248 - 9015089
Alignment:
| Q |
1 |
agaaaaggggaaaaaactctttctattcaattaattgagaaatgagtacataagtgtatttatatgtgtatagtttcaacaacttgcttagttgtgtaac |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9015248 |
agaaaagggggaaaaactctttctattcaattaattgagaaatgagtacataagtgtatttatatgtgtatagtttcaacaacttgcttagttgtgtaac |
9015149 |
T |
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| Q |
101 |
taattcactaatcctattataaccaactacttatagctaattacaacaattatttctaca |
160 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9015148 |
taattcactaatcctattgtaaccaactacttatagctaattacaacaattatttctaca |
9015089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 14720605 - 14720446
Alignment:
| Q |
1 |
agaaaaggggaaaaaactctttctattcaattaattgagaaatgagtacataagtgtatttatatgtgtatagtttcaacaacttgcttagttgtgtaac |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14720605 |
agaaaaagggaaaaaactctttctattcaattaattgagaaatgagtacataagtgtatttatatgtgtatagtttcaacaacttgcttagttgtgtaac |
14720506 |
T |
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| Q |
101 |
taattcactaatcctattataaccaactacttatagctaattacaacaattatttctaca |
160 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14720505 |
taattcactaatcctattgtaaccaactacttatagctaattacaacaattatttctaca |
14720446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 8984772 - 8984613
Alignment:
| Q |
1 |
agaaaaggggaaaaaactctttctattcaattaattgagaaatgagtacataagtgtatttatatgtgtatagtttcaacaacttgcttagttgtgtaac |
100 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8984772 |
agaaaggggggaaaaactctttctattcaattaattgagaaatgagtacataagtgtatttatatgtgtatagtttcaacaacttgcttagttgtgtaac |
8984673 |
T |
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| Q |
101 |
taattcactaatcctattataaccaactacttatagctaattacaacaattatttctaca |
160 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8984672 |
taattcactaatcctattgtaaccaactacttatagctaattacaacaattatttctaca |
8984613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 29218867 - 29218819
Alignment:
| Q |
160 |
atgaaggaatggtggtggatagaaaaactctcaatgaggctcaaagaaa |
208 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
29218867 |
atgaaggaatggttgtggatagaaaaactctaaatgaggctcaaagaaa |
29218819 |
T |
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