View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8066_low_3 (Length: 527)
Name: NF8066_low_3
Description: NF8066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8066_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 5 - 509
Target Start/End: Complemental strand, 5422726 - 5422224
Alignment:
| Q |
5 |
ctattttcagaaataatcactatgtattcgagagtatgcaagaatctctgctaccatttcagttctatatataccagttatatatctacttaaaaattta |
104 |
Q |
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||||||| |||||||||||||||||||| || |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
5422726 |
ctatttttagaaataatcactatgtattaaagtgtatgcgagtttctctgctaccatttcagttctatatataccagttatatatctacttcaaaagtta |
5422627 |
T |
|
| Q |
105 |
gtttagtttcatcattctctctgcattttgtccttatgaaggaactttggccacattatgtcattgcaaattatttctcattaattgtgaaacaatgtca |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| |
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| T |
5422626 |
gtttagtttcatcattctctctgcattttgtccttatgaatgaactttggccacattat--cattgcatattatttctcattaattgtgaagcaatgtca |
5422529 |
T |
|
| Q |
205 |
acacaaaattagaaaatgaaatgtggattaaagttcactcataaggccttaaaaagaactgcaaacataatgttgtcatgctttgcaatctcattgatta |
304 |
Q |
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| T |
5422528 |
acacaaagttagaaaatgaaatgtggattaaagttcactcataaggccttaaaaagaactgcaaacataatgttgtcatgctttgcaatctcattgatta |
5422429 |
T |
|
| Q |
305 |
atatttagtggttagtagaagaactgtagtctgaggttttcagaaagcaagaggaaatgaaccttctttgaaacaatctacaaccaaatgaacttagttg |
404 |
Q |
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| T |
5422428 |
atatttagtggttagtagaagaactgtagtctgaggttttcagaaagcaagaggaaatgaaccttcattgaaacaatctacaaccaaatgaacttagttg |
5422329 |
T |
|
| Q |
405 |
ttttatatttatgataaattttacttccaagatcattattatataagcaatgaccaaatctataaaactagttttcctactttaaaagattactggtata |
504 |
Q |
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| T |
5422328 |
ttttatatttatgataaattttacttccaagatcattattatataagcaatgaccaaatctataaaaccagttttcctagtttaaaagattactggtata |
5422229 |
T |
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| Q |
505 |
tatct |
509 |
Q |
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||||| |
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| T |
5422228 |
tatct |
5422224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 5364039 - 5364104
Alignment:
| Q |
7 |
attttcagaaataatcactatgtattcgagagtatgcaagaatctctgctaccatttcagttctat |
72 |
Q |
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| T |
5364039 |
attttcagaaataatcactttgtattagaatgtatgaaagtttctctgctaccatttcagttctat |
5364104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 5356313 - 5356362
Alignment:
| Q |
60 |
atttcagttctatatataccagttatatatctacttaaaaatttagttta |
109 |
Q |
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| T |
5356313 |
atttcagttttatatataccagttatatatgtacttcaaaagttagttta |
5356362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 5345472 - 5345407
Alignment:
| Q |
7 |
attttcagaaataatcactatgtattcgagagtatgcaagaatctctgctaccatttcagttctat |
72 |
Q |
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||||||||||||||||| | |||||| || | |||| || |||||||||||||||||||||||| |
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| T |
5345472 |
attttcagaaataatcaatctgtattgtagtgcatgctagtttctctgctaccatttcagttctat |
5345407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 5356377 - 5356434
Alignment:
| Q |
106 |
tttagtttcatcattctctctgcattttgtccttatgaaggaactttggccacattat |
163 |
Q |
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|||||||||||| ||| ||||||||||||||||||| | ||||||| ||||||||| |
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| T |
5356377 |
tttagtttcatctttcactctgcattttgtccttatcattgaactttcaccacattat |
5356434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 6e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 20334797 - 20335028
Alignment:
| Q |
5 |
ctattttcagaaataatcactatgtattcgagagtatgcaagaatctctgctaccatttcagttctatatataccagttatatatctacttaaaaattta |
104 |
Q |
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|||||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
20334797 |
ctattttcagaaataatcactatgtattagagtgtatgtgagtttctctgctaccatttcagttctatatataccagttatatatctacttcaaaagtta |
20334896 |
T |
|
| Q |
105 |
gtttagtttcatcattctctctgcattttgtccttatgaaggaactttggccacattatgtcattgcaaattatttctcattaattgtgaaacaatgtca |
204 |
Q |
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| T |
20334897 |
gtttagtttcatcattctctctgcattttgtccttatgaatgaactttggccacatta--tcattgcatattatttctcattaattgtgaaacaatgtca |
20334994 |
T |
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| Q |
205 |
acacaaaattagaaaatgaaatgtggattaaagt |
238 |
Q |
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||||||| ||||||||||||| |||||||||||| |
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| T |
20334995 |
acacaaagttagaaaatgaaacgtggattaaagt |
20335028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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